Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30430
(525 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 27 1.7
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr... 27 2.3
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 26 3.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 3.0
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 4.0
SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 4.0
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 25 9.1
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 159 VKPKSQYDKINKYASIQNKHIMNTSKTSRAGSNS 58
V PK + KI K+ +NKH TS NS
Sbjct: 595 VSPKGRRKKITKHTKKKNKHASETSVAPEKVDNS 628
>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 514
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 125 LFILSYCDFGFTRQI*RIVVVGVLHRMRFCVLAG 226
L + SY D+ F Q+ I G+L R C+ +G
Sbjct: 461 LALSSYSDYNFNTQVLPIEFDGLLDEERTCIFSG 494
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 117 SIQNKHIMNTSKTSRAGSNSRARYTT 40
SI N HI+NT + + + RYTT
Sbjct: 125 SIYNPHILNTFCLGKTAPSDKNRYTT 150
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 3.0
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Frame = -1
Query: 330 ITSSETRLHYNLP---SSVLDNGSRELLFWDIVAHLIGPAKTQNLILCNTPTTTIR*ICL 160
ITSS T L+ + P SSVL++ + + V + P + ++ +TP T++ +
Sbjct: 2520 ITSS-TVLNSSTPITSSSVLNSSTP--ITSSTVVNTSTPITSSTVVNSSTPITSLTALNS 2576
Query: 159 VKPKSQYDKINKYASIQNKHIMNTSK--TSRAGSNSRARYTTDGHPNIRTP 13
P + +N I + ++NTS TS NS T+ N TP
Sbjct: 2577 STPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTP 2627
Score = 25.4 bits (53), Expect = 5.2
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Frame = -1
Query: 330 ITSSETRLHYNLP--SSVLDNGSRELLFWDIVAHLIGPAKTQNLILCNTPTTTIR*ICLV 157
ITSS L+ + P SS + N S + +V + P + ++ +TP T+ +
Sbjct: 1140 ITSSSV-LNSSTPITSSTVVNTSTPITSSTVV-NSSTPITSSTVVNTSTPITSSTVVNTS 1197
Query: 156 KPKSQYDKINKYASIQNKHIMNTSK--TSRAGSNSRARYTTDGHPNIRTP 13
P + +N I + ++NTS TS + NS T+ N TP
Sbjct: 1198 TPITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSSTPITSSSILNSSTP 1247
Score = 25.4 bits (53), Expect = 5.2
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Frame = -1
Query: 330 ITSSETRLHYNLP--SSVLDNGSRELLFWDIVAHLIGPAKTQNLILCNTPTTTIR*ICLV 157
ITSS L+ + P SS + N S + +V + P + ++ +TP T+ +
Sbjct: 1452 ITSSSV-LNSSTPITSSTVVNTSTPITSSTVV-NSSTPITSSTVVNTSTPITSSTVVNTS 1509
Query: 156 KPKSQYDKINKYASIQNKHIMNTSK--TSRAGSNSRARYTTDGHPNIRTP 13
P + +N I + ++NTS TS + NS T+ N TP
Sbjct: 1510 TPITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSSTPITSSSVLNSSTP 1559
Score = 25.0 bits (52), Expect = 6.9
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = -1
Query: 225 PAKTQNLILCNTPTTTIR*ICLVKPKSQYDKINKYASIQNKHIMNTSK--TSRAGSNSRA 52
P + +++ +TP T+ + P + +N I + ++NTS TS + NS
Sbjct: 1955 PITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSSVLNTSTPITSSSVLNSST 2014
Query: 51 RYTTDGHPNIRTP 13
T+ N TP
Sbjct: 2015 PITSSTVVNTSTP 2027
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 114 IQNKHIMNTSKTSRAGSNSRA 52
I+NKH N+SK+SRA ++ A
Sbjct: 142 IKNKHGKNSSKSSRAAQSAAA 162
>SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 357 KIMSDPKNVITSSETRLHYNLPSSVLDNGSRELLFWDIVAHLIG 226
K+ PK + +++TR HY L + +L W+IV+H+ G
Sbjct: 50 KVPVYPKRPLYTTDTRTHYYLKNCF------RILEWEIVSHVGG 87
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 24.6 bits (51), Expect = 9.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 26 FGWPSVVYRARELEPALEVLDVFIMCLFCIEAYLFI 133
F P ++ L+ LE+L +F + CI A LF+
Sbjct: 309 FPGPKKLHTTVRLKHRLEILSLFSVLFTCIVAGLFL 344
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,822
Number of Sequences: 5004
Number of extensions: 40717
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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