Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30430
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1266 + 27444755-27444760,27445598-27446740                       27   9.2  
08_02_0114 + 12754155-12754370,12754792-12755340,12755410-127555...    27   9.2  

>12_02_1266 + 27444755-27444760,27445598-27446740
          Length = 382

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 22/97 (22%), Positives = 39/97 (40%)
 Frame = +2

Query: 44  VYRARELEPALEVLDVFIMCLFCIEAYLFILSYCDFGFTRQI*RIVVVGVLHRMRFCVLA 223
           V+R+       + +D F +    +  YL I+  CD     +I    V  V   +   ++ 
Sbjct: 47  VHRSDHQRYNKKFMDAFSLIAITVAGYLMIIIICD--QVLKIISSAVQTVCFVILLLLVL 104

Query: 224 GPMRCATMSQKSNSREPLSRTEDGRL*CSLVSELVMT 334
            P+  A  +QK+ S +    T D      L+ E + T
Sbjct: 105 SPVAIAVKAQKTESMKQEEETRDQAERIGLLQEQIST 141


>08_02_0114 +
           12754155-12754370,12754792-12755340,12755410-12755512,
           12755552-12756060
          Length = 458

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 303 YNLPSSVLDNGSRELLFWDIVAHLIGPAKT 214
           +NLP +  +N   E  FW +   ++GP KT
Sbjct: 4   FNLPENFKENP--EAFFWSVRPRVVGPQKT 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,869,874
Number of Sequences: 37544
Number of extensions: 239755
Number of successful extensions: 599
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)