Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30430
         (525 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28164| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09)               27   7.2  
SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       27   7.2  

>SB_28164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -1

Query: 378 SPNSR*NKIMSDPKNVITSSETRLH-YNLPSSVLDNGSRE 262
           SP  R NKI S+ K+VIT  + R +   + SSVLD+ +RE
Sbjct: 128 SPPKRENKISSE-KDVITPGQPRKNPEKISSSVLDSQTRE 166


>SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09)
          Length = 645

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -1

Query: 360 NKIMSDPKNVITSSETRLHYNLPSSVLDNGSRELLFWDI 244
           +++  DP   I++S  ++ Y +   V +N  RELL +++
Sbjct: 47  SRMTEDPNGKISASAAQISYKMQVPVAENQERELLEFEM 85


>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 96   MNTSKTSRAGSNSRARYTTDGHP 28
            ++ SKT+R G N+R  +T  G+P
Sbjct: 5744 LDWSKTARKGENARITFTVSGNP 5766


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,498,514
Number of Sequences: 59808
Number of extensions: 294740
Number of successful extensions: 807
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)