Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30430
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47070-3|CAA87341.1|  528|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resis...    27   6.2  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    27   8.2  

>Z47070-3|CAA87341.1|  528|Caenorhabditis elegans Hypothetical
           protein T09B9.4 protein.
          Length = 528

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 81  TSRAGSNSRARYTTDGHPNIRTPALL 4
           TSRAGSNS A    D HP+ +   +L
Sbjct: 482 TSRAGSNSTANINNDTHPHAQVAPIL 507


>U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 6 protein.
          Length = 1396

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 26/97 (26%), Positives = 38/97 (39%)
 Frame = -1

Query: 507 KLQKQTTNVKCRDRVATADPGLTPIHPTLYQSMNKINID*FH*SPNSR*NKIMSDPKNVI 328
           KLQ   T V+  +      P   P  P   +SM KIN +    S   R N ++S  K   
Sbjct: 702 KLQAVETEVQSDELFVDGPPSSPPPSPVNIESMEKINKE----SIFQRANSVLSGSKMSE 757

Query: 327 TSSETRLHYNLPSSVLDNGSRELLFWDIVAHLIGPAK 217
           T     + Y    S   + S   ++W+    +I P K
Sbjct: 758 TEYVKEIVYESRKSGTISWS---VYWEYTRGVINPLK 791


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 147 SQYDKINKYASIQNKHIMNTSKTSRAGSNSRARYTTDG 34
           S++  I +YAS  N +I   S  ++ GSNS  + +  G
Sbjct: 84  SRFGTICQYASTYNNYICCYSTNTQCGSNSSPQVSASG 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,536,277
Number of Sequences: 27780
Number of extensions: 231101
Number of successful extensions: 693
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)