Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30430
         (525 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   0.83 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   0.83 
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   1.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   3.3  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    22   4.4  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    22   4.4  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    22   4.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   5.8  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   7.7  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 32  WPSVVYRARELEPALEVLDVFIMCLFCI-EAYLFILSYCD 148
           WP ++ + +EL  A+     +++ LFCI E  +++    D
Sbjct: 407 WPRLLRKRKELFIAIVCFVSYLIGLFCITEGGMYVFQLLD 446


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 32  WPSVVYRARELEPALEVLDVFIMCLFCI-EAYLFILSYCD 148
           WP ++ + +EL  A+     +++ LFCI E  +++    D
Sbjct: 460 WPRLLRKRKELFIAIVCFVSYLIGLFCITEGGMYVFQLLD 499


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 388 LVNINFVHGLV*RRMNRSKPR-VGSSYSISALNVC 489
           +VNIN   GL    MNR++P  + S  +++ L  C
Sbjct: 140 IVNINDASGLNLLPMNRNRPAYLASKCALTTLTDC 174


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 323 LVMTFLGSDIILFYRLFG 376
           LVMTF G + +L Y +FG
Sbjct: 77  LVMTFAGVNDLLGYWVFG 94


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 83  LDVFIMCLFCIEAYLFILSYCDFGFTRQI*RIVVVGVLHRMR 208
           + V I+CL  + A + + +  D  +T +   I V  +LH  R
Sbjct: 1   MKVSIICLVLMAAIVLVAARPDESYTSKFDNINVDEILHSDR 42


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 83  LDVFIMCLFCIEAYLFILSYCDFGFTRQI*RIVVVGVLHRMR 208
           + V I+CL  + A + + +  D  +T +   I V  +LH  R
Sbjct: 1   MKVSIICLVLMAAIVLVAARPDESYTSKFDNINVDEILHSDR 42


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 83  LDVFIMCLFCIEAYLFILSYCDFGFTRQI*RIVVVGVLHRMR 208
           + V I+CL  + A + + +  D  +T +   I V  +LH  R
Sbjct: 1   MKVSIICLVLMAAIVLVAARPDESYTSKFDNINVDEILHSDR 42


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 335 TSLQVQKQDCITISRPRSSTTAHESYFFGTSWHISSALL 219
           T L      C+ I+R +S  TA   Y F  S  +S  LL
Sbjct: 66  TGLVGNVSTCVVIARNKSMHTATNYYLF--SLAVSDLLL 102


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +2

Query: 209 FCVLAGPMRCATMSQKSNSREPLSRTEDG 295
           FCV  G +    +  + ++ + + +TE G
Sbjct: 10  FCVCVGALTIEELKTRLHTEQSVCKTETG 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,203
Number of Sequences: 438
Number of extensions: 2899
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)