Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30430
         (525 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49430.1 68418.m06116 transducin family protein / WD-40 repea...    31   0.47 
At3g54680.1 68416.m06050 proteophosphoglycan-related contains si...    29   1.9  

>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein 9
           (SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
           domain, G-beta repeat (4 copies)
          Length = 1677

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 147 SQYDKINKYASIQNKHIMNTSKTSRAGSNSRARYTTDGHPN 25
           S+Y+   +Y+S + +  +N+S +  +GS+S   Y  D H N
Sbjct: 789 SEYNVPEEYSSGKEQECLNSSTSGESGSSSGESYEDDDHQN 829


>At3g54680.1 68416.m06050 proteophosphoglycan-related contains
           similarity to proteophosphoglycan [Leishmania major]
           gi|5420389|emb|CAB46680
          Length = 211

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 129 NKYASIQNKHIMNTSKTSRAGSNSRARYTTDGHPNIR 19
           NKY SI   HI++    S + S+S A Y++    N R
Sbjct: 7   NKYTSINFNHILHKDPPSSSSSSSSASYSSVARSNGR 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,582,991
Number of Sequences: 28952
Number of extensions: 201153
Number of successful extensions: 484
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)