Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30428
         (385 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    28   0.037
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    28   0.037
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    23   1.4  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   5.6  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 27.9 bits (59), Expect = 0.037
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -1

Query: 217 RTHYEWNVIILNVV---TVFFQIEGAGLFSE 134
           RT+ EW V  L VV   TVFF + GA + S+
Sbjct: 50  RTYIEWGVKFLKVVTIITVFFVVLGAAVVSK 80


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 27.9 bits (59), Expect = 0.037
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -1

Query: 217 RTHYEWNVIILNVV---TVFFQIEGAGLFSE 134
           RT+ EW V  L VV   TVFF + GA + S+
Sbjct: 50  RTYIEWGVKFLKVVTIITVFFVVLGAAVVSK 80


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -1

Query: 247 VVKMSSIWSDRTHYEWNVIILNVVTVFF 164
           V  M   W D   ++W V I  V  V F
Sbjct: 188 VQSMPQCWIDLQTWQWKVYITLVALVLF 215


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 256 YDGSYADTTSIETMREWHRPRIQALVEAGVDLLALET 366
           Y+G   D T+ +  R  +    +  VEAG D +  E+
Sbjct: 53  YEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,267
Number of Sequences: 336
Number of extensions: 1770
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8014124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)