Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30428
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.19 
SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   3.1  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    25   4.1  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    25   4.1  
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    24   7.1  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    24   7.1  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    24   9.4  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    24   9.4  

>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 29.5 bits (63), Expect = 0.19
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -3

Query: 116 LIHNLVLSLLPDALRSLPLKLGMYW 42
           L H++++SLLPD +R+L LK   Y+
Sbjct: 214 LYHSMIISLLPDGIRNLFLKAISYF 238


>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 131 QLAKQARTLYLEEYRDYVQNDDIPLIVG 214
           ++A +A  +     RDYVQN+DI  + G
Sbjct: 19  KIATEAGHIVYNVVRDYVQNEDIEKVHG 46


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 22/81 (27%), Positives = 37/81 (45%)
 Frame = +2

Query: 32  LIITNTYQASVEGFVEHLGVTKEQGYELIARAVQLAKQARTLYLEEYRDYVQNDDIPLIV 211
           + +TNT+   V  F+    + K Q  E   + + L+     L + +   Y+QNDDI  I 
Sbjct: 271 IAVTNTHCDIVTSFL----LKKLQILEA-PKVIDLSPFENALDVLQVLVYIQNDDIIRIC 325

Query: 212 GSVGPYGAHLHDGSDTMAVMQ 274
            S  P   HL + +   + +Q
Sbjct: 326 ESCVPSLLHLQENTTLRSKVQ 346


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 110 ELIARAVQLAKQARTLYLEEYRDYVQNDDIPLIVGSVG 223
           +L+ +A     +     +EEY++ VQND   L+   VG
Sbjct: 366 DLLKKAFAYTSEVFEKIVEEYKNIVQNDFYDLMFKRVG 403


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 87  PRCSTKPSTEAWYVLV 40
           PRC TK   E+W  LV
Sbjct: 75  PRCFTKEQAESWIPLV 90


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 38  ITNTYQASVEGFVEHLGVTKEQGYE 112
           +TNT Q + +    H G  +E+GYE
Sbjct: 755 LTNTLQFTTKEIDIHTGEPEEEGYE 779


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 212 GSVGPYGAHLHDGS 253
           GS  P G HLH+GS
Sbjct: 196 GSYCPSGTHLHEGS 209


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 262 HRIGTVVKMSSIWSDRTH 209
           H + T+  MSS WS  TH
Sbjct: 210 HNLSTLESMSSSWSRYTH 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,597,499
Number of Sequences: 5004
Number of extensions: 31389
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)