Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30428
(385 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1048 + 25675563-25675760,25676995-25677051,25677132-256773... 85 2e-17
10_08_0045 + 14407892-14408068,14408759-14408815,14408899-144091... 73 1e-13
01_06_0875 - 32650150-32650350,32650464-32650788,32650872-326510... 67 5e-12
03_02_0194 + 6322499-6322654,6323540-6323596,6323702-6323907,632... 62 2e-10
07_03_1706 + 28855669-28855801,28856013-28856044,28856158-288562... 30 0.55
07_03_1106 + 24017601-24019955 30 0.72
11_06_0080 - 19880319-19880957,19881800-19881948,19882266-198835... 28 2.2
07_01_0934 + 7870920-7871454,7871533-7872413,7873313-7873414 27 5.1
01_06_0161 + 27108920-27109279,27109479-27109598,27110301-271104... 27 5.1
12_02_0243 + 16237293-16237472,16238078-16238518 26 8.9
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 26 8.9
02_05_0562 - 29970207-29970224,29970290-29970364,29971083-299714... 26 8.9
01_06_0840 + 32343700-32344138,32345329-32345419,32345584-323458... 26 8.9
>12_02_1048 +
25675563-25675760,25676995-25677051,25677132-25677331,
25677412-25677541,25677642-25677845,25678017-25678088,
25678379-25678546
Length = 342
Score = 85.0 bits (201), Expect = 2e-17
Identities = 40/85 (47%), Positives = 64/85 (75%)
Frame = +2
Query: 2 HLDFLRAGADLIITNTYQASVEGFVEHLGVTKEQGYELIARAVQLAKQARTLYLEEYRDY 181
HLD+L AGA++IIT +YQA+++GF E G +KEQ +L+A++V++A++AR ++L+E+ D
Sbjct: 68 HLDYLEAGANIIITASYQATIQGF-ESKGFSKEQSEDLLAKSVEIAREARDMFLKEHSDR 126
Query: 182 VQNDDIPLIVGSVGPYGAHLHDGSD 256
I L+ S+G YGA+L DGS+
Sbjct: 127 PIQHPI-LVAASIGSYGAYLADGSE 150
Score = 46.0 bits (104), Expect = 1e-05
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = +1
Query: 256 YDGSYADTTSIETMREWHRPRIQALVEAGVDLLALETIP 372
Y G Y + ++E ++++H+ R++ L EAG DL+A ETIP
Sbjct: 151 YSGDYGEAGTLEFLKDFHKRRLEVLAEAGPDLIAFETIP 189
>10_08_0045 +
14407892-14408068,14408759-14408815,14408899-14409125,
14409271-14409400,14409848-14410051,14410127-14410198,
14410468-14410608
Length = 335
Score = 72.5 bits (170), Expect = 1e-13
Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 8/93 (8%)
Frame = +2
Query: 2 HLDFLRAGADLIITNTYQASVEGFVEHLGVTKEQGYELIARAVQLAKQARTLYLE----- 166
HLD+L AGA ++IT +YQA+++GF+ G ++E+ + R+V+LA +AR +YLE
Sbjct: 61 HLDYLEAGASVLITGSYQATIQGFLSK-GFSQEESESFLRRSVELACEARAIYLEKCSNG 119
Query: 167 --EYRDYVQNDDIP-LIVGSVGPYGAHLHDGSD 256
E +D + P LI SVG YGA+L DGS+
Sbjct: 120 SDEAKDVTKYRKRPILIAASVGSYGAYLADGSE 152
Score = 41.1 bits (92), Expect = 3e-04
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 256 YDGSYADTTSIETMREWHRPRIQALVEAGVDLLALETIP 372
Y G Y + ++E ++ +H R+Q L EAG D++ ETIP
Sbjct: 153 YSGDYGNEGTLEFLKNFHLRRLQVLAEAGPDVIVFETIP 191
>01_06_0875 -
32650150-32650350,32650464-32650788,32650872-32651092,
32651187-32651243,32651333-32651515
Length = 328
Score = 66.9 bits (156), Expect = 5e-12
Identities = 34/91 (37%), Positives = 60/91 (65%), Gaps = 6/91 (6%)
Frame = +2
Query: 2 HLDFLRAGADLIITNTYQASVEGFVEHLGVTKEQGYELIARAVQLAKQARTLYLEEYR-- 175
HLD+L AGA++I + +YQA+++GF + G+++E+ L+ R+V +A++AR ++ E +
Sbjct: 63 HLDYLDAGANIITSASYQATIQGF-QARGLSRERSEALLRRSVHIAQEARAIFAEGWSKG 121
Query: 176 DYVQNDDIP----LIVGSVGPYGAHLHDGSD 256
Y + P L+ S+G YGA+L DGS+
Sbjct: 122 PYANHRSSPRRPVLVAASIGSYGAYLADGSE 152
Score = 46.0 bits (104), Expect = 1e-05
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +1
Query: 256 YDGSYADTTSIETMREWHRPRIQALVEAGVDLLALETIP 372
Y G Y + + ET++ +HR R+Q L +AG DL+A ETIP
Sbjct: 153 YTGDYGISVTKETLKSFHRRRLQVLADAGPDLIAFETIP 191
>03_02_0194 +
6322499-6322654,6323540-6323596,6323702-6323907,
6324028-6324157,6324285-6324488,6324599-6324670,
6324844-6325008
Length = 329
Score = 61.7 bits (143), Expect = 2e-10
Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 HLDFLRAGADLIITNTYQASVEGFVEHLGVTKEQGYELIARAVQLAKQAR-TLYLEEYRD 178
H+ +L AGAD+II+++YQA++ GF+ G+ E+ L+ R+++LA +AR + R
Sbjct: 54 HMQYLEAGADVIISSSYQATIPGFLAR-GMLLEEAEGLLRRSIELALEARDEFWKSTLRK 112
Query: 179 YVQNDDIPLIVGSVGPYGAHLHDGSD 256
+ L+ S+G YGA+L DGS+
Sbjct: 113 SKPVYNRALVAASIGSYGAYLADGSE 138
Score = 45.2 bits (102), Expect = 2e-05
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 256 YDGSYADTTSIETMREWHRPRIQALVEAGVDLLALETIP 372
Y GSY + + E ++++HR R+Q L AG DL+A E IP
Sbjct: 139 YSGSYGEDITAEKLKDFHRRRLQVLASAGPDLIAFEAIP 177
>07_03_1706 +
28855669-28855801,28856013-28856044,28856158-28856229,
28856631-28856727,28857195-28857256,28857726-28858024,
28858306-28858663,28858692-28859297,28859500-28859698,
28860039-28860101,28860603-28860673
Length = 663
Score = 30.3 bits (65), Expect = 0.55
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -3
Query: 305 HSRIVSIDVVSA*LPSYRNRREDELH--MVRQNPL*VECHHFER 180
H R++S+ V A LPS+ N++ +++ + R V+C + +R
Sbjct: 216 HERVLSVSTVDADLPSFINKKMEQMEQTIARAKSCTVDCRNVDR 259
>07_03_1106 + 24017601-24019955
Length = 784
Score = 29.9 bits (64), Expect = 0.72
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 265 CHRIGTVVKMSSIWSDRTHYEWNVIILNVVTVFFQIEGAGLFSELNCAG 119
C I T +K S + DR Y +N +I E + LFSE+ C+G
Sbjct: 647 CENILTEIKSSGVRPDR--YSYNTVIYAYGRKGQMKEASRLFSEMKCSG 693
>11_06_0080 -
19880319-19880957,19881800-19881948,19882266-19883589,
19883766-19883953,19884034-19884499
Length = 921
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2
Query: 384 FLXTWNCL*CEEVYSR 337
FL TWNCL C VY+R
Sbjct: 668 FLATWNCLRCILVYAR 683
>07_01_0934 + 7870920-7871454,7871533-7872413,7873313-7873414
Length = 505
Score = 27.1 bits (57), Expect = 5.1
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = +2
Query: 86 GVTKEQGYELIARAVQLAKQARTLYLEEYRDYVQND-------DIPLIVGSVGPYGAHLH 244
G ++Q YEL++RAV+ + + L L + D +++D D+ + V VGP LH
Sbjct: 207 GHAQDQIYELVSRAVEAVRTSSGLILNTF-DALEHDELAALRRDLDVPVFDVGP----LH 261
Query: 245 DGSDTMAVMQTPRQ*RLC 298
S T RQ R C
Sbjct: 262 KLSPTAPPSSLLRQDRGC 279
>01_06_0161 +
27108920-27109279,27109479-27109598,27110301-27110438,
27110680-27110784,27110883-27111051,27111507-27111583,
27111796-27111840,27111984-27112022,27112374-27112457,
27112846-27112884,27112963-27113025,27113109-27113238,
27113319-27113374
Length = 474
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +2
Query: 239 LHDGSD---TMAVMQTPRQ*RLCGNGIGPEFKR 328
LHDGS T+ TP + GNGI P+++R
Sbjct: 422 LHDGSGIVVTVGKYVTPNHKDINGNGIEPDYRR 454
>12_02_0243 + 16237293-16237472,16238078-16238518
Length = 206
Score = 26.2 bits (55), Expect = 8.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 289 LLTWCLHNCHRIGTVVKMSSI 227
+L W NCHR TV +M+ +
Sbjct: 173 ILKWWKDNCHRYPTVARMARV 193
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = -1
Query: 217 RTHYEWNVIILNVVTVFFQIEGAGLFSELNCAGY*FITLFFRYSQMLY 74
RTH + ++++++ V QI + NC G+ +FF ++Q+ Y
Sbjct: 463 RTHRTSSQVVIDLLNVAKQIRKTPIVVG-NCTGFAVNRMFFPFTQVAY 509
>02_05_0562 -
29970207-29970224,29970290-29970364,29971083-29971441,
29971572-29971713,29971906-29972025,29972139-29972216,
29972330-29972429,29972522-29972571,29972827-29972904,
29973624-29973751,29973776-29973977,29974045-29974144,
29974236-29974551,29974645-29974690,29975526-29975622,
29977254-29977258,29977643-29977708,29978631-29978690,
29979167-29979272,29979513-29979658,29980731-29980813,
29980951-29981056,29996243-29996266,29996378-29996438,
29996467-29996750,29996914-29997096
Length = 1010
Score = 26.2 bits (55), Expect = 8.9
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 35 IITNTYQASVEGFV--EHLGVTKEQGYELIARAVQLAKQARTLYLEEYRDY 181
++ N + S + FV E L V E+GY A ++A LE RDY
Sbjct: 286 VVQNEWNGSTKTFVSMEELSVDYERGYLNSADVKMALEKAINNILEPVRDY 336
>01_06_0840 +
32343700-32344138,32345329-32345419,32345584-32345866,
32346023-32346097,32346470-32346514,32346889-32346979,
32347060-32347118,32347621-32347704,32348109-32348168,
32348585-32348637,32348724-32348757,32349334-32350335,
32350477-32351035,32351873-32352372,32352793-32353200
Length = 1260
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 52 PSFSGRLRRASGSNERT 102
P FSGR +R GSNE T
Sbjct: 31 PRFSGRAQRRRGSNEAT 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,668,903
Number of Sequences: 37544
Number of extensions: 221704
Number of successful extensions: 487
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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