Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30428
         (385 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40030| Best HMM Match : RVT_1 (HMM E-Value=0.0013)                  28   3.0  
SB_37614| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_976| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   5.2  
SB_1494| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  

>SB_40030| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
          Length = 268

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 59  SVEGFVEHLGVTKEQGYELIA-RAVQLAKQARTLYLEEYRDYVQN 190
           SV+ F+E L V K  GY+ I  R ++LA +   +Y       V N
Sbjct: 47  SVQSFLEKLNVRKASGYDSITPRLLKLASRVDKVYESMMSTQVNN 91


>SB_37614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 59  SVEGFVEHLGVTKEQGYELIA-RAVQLAKQA 148
           SV+ F+E L V K  GY+ I  R ++LA +A
Sbjct: 47  SVQSFLEKLNVRKASGYDSITPRLLKLASRA 77


>SB_976| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 298 REWHRPRIQALVEAGVDLLALET 366
           RE  + R+ ALVEAGVD++ +++
Sbjct: 238 REDDKARLHALVEAGVDVVVIDS 260


>SB_1494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 2   HLDFLRAGADLIITNTYQAS 61
           H +FLRAG+D++ T T+ AS
Sbjct: 85  HREFLRAGSDVMQTFTFYAS 104


>SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 880

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 59  SVEGFVEHLGVTKEQGYELIA-RAVQLAKQAR 151
           SV+ F+E L V K  GY+ I  R ++LA + +
Sbjct: 432 SVQSFLEKLNVRKASGYDSITPRLLKLASRGK 463


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 143  QARTLYLEEYRDYVQNDDIPLIVGSVGP 226
            Q  TL +  Y DY+  +D P I  ++ P
Sbjct: 3205 QPETLQVASYADYIYYNDYPRITTAIAP 3232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,054,775
Number of Sequences: 59808
Number of extensions: 241978
Number of successful extensions: 461
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)