Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30428
         (385 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50929-1|AAC50668.1|  406|Homo sapiens betaine:homocysteine meth...    29   6.8  
BC012616-1|AAH12616.1|  406|Homo sapiens betaine-homocysteine me...    29   6.8  
AF118378-1|AAD22043.1|  406|Homo sapiens betaine-homocysteine me...    29   6.8  

>U50929-1|AAC50668.1|  406|Homo sapiens betaine:homocysteine
           methyltransferase protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = +2

Query: 2   HLDFLRAGADLIITNTYQASVEGFVEHLG---VTKEQGYELIARAVQLAKQ 145
           H +FLRAG++++ T T+ AS E  +E+ G   + K  G E+   A  +A+Q
Sbjct: 60  HREFLRAGSNVMQTFTFYAS-EDKLENRGNYVLEKISGQEVNEAACDIARQ 109


>BC012616-1|AAH12616.1|  406|Homo sapiens betaine-homocysteine
           methyltransferase protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = +2

Query: 2   HLDFLRAGADLIITNTYQASVEGFVEHLG---VTKEQGYELIARAVQLAKQ 145
           H +FLRAG++++ T T+ AS E  +E+ G   + K  G E+   A  +A+Q
Sbjct: 60  HREFLRAGSNVMQTFTFYAS-EDKLENRGNYVLEKISGQEVNEAACDIARQ 109


>AF118378-1|AAD22043.1|  406|Homo sapiens betaine-homocysteine
           methyltransferase protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = +2

Query: 2   HLDFLRAGADLIITNTYQASVEGFVEHLG---VTKEQGYELIARAVQLAKQ 145
           H +FLRAG++++ T T+ AS E  +E+ G   + K  G E+   A  +A+Q
Sbjct: 60  HREFLRAGSNVMQTFTFYAS-EDKLENRGNYVLEKISGQEVNEAACDIARQ 109


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,472,353
Number of Sequences: 237096
Number of extensions: 1259158
Number of successful extensions: 2142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2142
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2583773550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)