Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30425
         (417 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ...    60   8e-10
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)            59   1e-09
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ...    58   3e-09
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ...    52   2e-07
At2g47115.1 68415.m05884 expressed protein                             28   2.9  
At5g05440.1 68418.m00586 expressed protein low similarity to cyt...    27   3.8  
At1g61030.1 68414.m06871 expressed protein                             27   6.7  

>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 112

 Score = 59.7 bits (138), Expect = 8e-10
 Identities = 28/54 (51%), Positives = 37/54 (68%)
 Frame = +3

Query: 93  ITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 254
           +T + +  RP   KG  +K + F+R+L++EV G A YEKR  ELLKV KDKRAL
Sbjct: 20  VTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRAL 73



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +2

Query: 263 KRRLGTHIRAKRKREELSNVLAQMR 337
           KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 77  KRKLGTHKRAKRKREEMSSVLRKMR 101


>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
          Length = 113

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 29/54 (53%), Positives = 36/54 (66%)
 Frame = +3

Query: 93  ITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 254
           +T + +  RP   KG  +K + F+R L+REV G A YEKR  ELLKV KDKRAL
Sbjct: 20  VTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRAL 73



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +2

Query: 263 KRRLGTHIRAKRKREELSNVLAQMR 337
           KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 77  KRKLGTHKRAKRKREEMSSVLRKMR 101


>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
           ribosomal protein L36, Arabidopsis thaliana,
           EMBL:AC004684
          Length = 108

 Score = 57.6 bits (133), Expect = 3e-09
 Identities = 27/46 (58%), Positives = 33/46 (71%)
 Frame = +3

Query: 117 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 254
           RP   KG  +K + F+R+L++EV G A YEKR  ELLKV KDKRAL
Sbjct: 24  RPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRAL 69



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +2

Query: 263 KRRLGTHIRAKRKREELSNVLAQMR 337
           KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 73  KRKLGTHKRAKRKREEMSSVLRKMR 97


>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 103

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 24/51 (47%), Positives = 34/51 (66%)
 Frame = +3

Query: 93  ITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDK 245
           +T + +  RP   KG  +K + F+R+L++EV G A YEKR  ELLKV+K K
Sbjct: 20  VTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVAKRK 70



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +2

Query: 263 KRRLGTHIRAKRKREELSNVLAQMR 337
           KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 68  KRKLGTHKRAKRKREEMSSVLRKMR 92


>At2g47115.1 68415.m05884 expressed protein
          Length = 300

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = -3

Query: 382 IYHLMVMVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELRARL 242
           IY  M +V S+ GCL HL E      TL    DV  +    E R RL
Sbjct: 112 IYFAMGIVASVYGCLIHLKE-----LTLETDEDVVVEKVGDEFRRRL 153


>At5g05440.1 68418.m00586 expressed protein low similarity to
           cytokinin-specific binding protein [Vigna radiata]
           GI:4190976
          Length = 203

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 334 HLSEHVAKFFTLPLGADVCAQSSLQELRA 248
           H+ EHVA   T  +G D C  S +Q + A
Sbjct: 40  HVPEHVAMHHTHDVGPDQCCSSVVQMIHA 68


>At1g61030.1 68414.m06871 expressed protein 
          Length = 840

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -3

Query: 337 PHLSEHVAKFFTLPLGADVCAQSSLQELRARLSFDTLSNSIALFSY*ACPTTSRTKSRTN 158
           PHL+  V K F   + +D C+ +    +++ LS    + S  L     C TT +  S+++
Sbjct: 412 PHLASAVKKGFVTIISSDTCSTTGFSSIKS-LSVSKRNQSAFLV---GCSTTPKPGSQSS 467

Query: 157 L 155
           +
Sbjct: 468 V 468


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,477,982
Number of Sequences: 28952
Number of extensions: 130923
Number of successful extensions: 314
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)