Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30424
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...   150   2e-37
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...   150   2e-37
SPCC1739.05 |set5||histone lysine methyltransferase Set5 |Schizo...    27   1.7  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.2  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   6.8  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   6.8  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   9.0  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    25   9.0  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score =  150 bits (363), Expect = 2e-37
 Identities = 67/90 (74%), Positives = 77/90 (85%)
 Frame = +2

Query: 239 KDCCPCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 418
           K  C  TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGIY
Sbjct: 64  KIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIY 123

Query: 419 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHR 508
           G+DFYVV+ RPG  VA R+ + G+VG+ H+
Sbjct: 124 GMDFYVVMDRPGMRVARRKAQRGRVGYTHK 153



 Score =  105 bits (252), Expect = 5e-24
 Identities = 54/82 (65%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
 Frame = +3

Query: 57  DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRN 236
           + ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRN
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62

Query: 237 EKIAVHVQSEELKQKKSL-RGV 299
           EKIA HV     K ++ L RG+
Sbjct: 63  EKIACHVTVRGPKAEEILERGL 84



 Score = 31.9 bits (69), Expect = 0.079
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 469 QKA*DRKSGISPPLTKEDAMKWFQQKYDGIIL 564
           +KA   + G +  +  ED + WF+QKYD ++L
Sbjct: 141 RKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score =  150 bits (363), Expect = 2e-37
 Identities = 67/90 (74%), Positives = 77/90 (85%)
 Frame = +2

Query: 239 KDCCPCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 418
           K  C  TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGIY
Sbjct: 64  KIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIY 123

Query: 419 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHR 508
           G+DFYVV+ RPG  VA R+ + G+VG+ H+
Sbjct: 124 GMDFYVVMDRPGMRVARRKAQRGRVGYTHK 153



 Score =  105 bits (252), Expect = 5e-24
 Identities = 54/82 (65%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
 Frame = +3

Query: 57  DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRN 236
           + ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRN
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62

Query: 237 EKIAVHVQSEELKQKKSL-RGV 299
           EKIA HV     K ++ L RG+
Sbjct: 63  EKIACHVTVRGPKAEEILERGL 84



 Score = 31.9 bits (69), Expect = 0.079
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 469 QKA*DRKSGISPPLTKEDAMKWFQQKYDGIIL 564
           +KA   + G +  +  ED + WF+QKYD ++L
Sbjct: 141 RKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172


>SPCC1739.05 |set5||histone lysine methyltransferase Set5
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 319

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -1

Query: 390 IPKSMCS*IPKPKLPVAEKLSRRNSYSLTFKPLSRISSALAPRTVHGQQSFH 235
           IP      I K K+PV  ++        T      I  AL+ +T   Q++FH
Sbjct: 14  IPNKGMGMIAKVKIPVGTRIFAETPLIRTKSDAKEIEEALSTKTKEEQEAFH 65


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 228 GYQKTALYT*PWKIQAVVL*VAPTPWRHESA 136
           G     +Y   W I A +L V P PWR+ S+
Sbjct: 121 GLYSHPIYPLLWVITAFILIVFPFPWRYRSS 151


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +3

Query: 87  HIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 230
           H++ +  N  +G        A K+ +QLTG+           R  GIR
Sbjct: 604 HLQNISNNYMIGAINAENGEANKLKDQLTGEYKTVPNVAIDYRDHGIR 651


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 295 PLKDFFCFSSSDCTWTAIFSLRRIPKDR 212
           PL D + F     +WT + S+ R P  R
Sbjct: 271 PLSDLWLFDLETLSWTEVRSIGRFPGPR 298


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 406 NWNLWTGLLRRTWPARFQRSTQK 474
           NW+    L R  WP  F RS+Q+
Sbjct: 644 NWSSIGRLRRSEWPRSFNRSSQQ 666


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +3

Query: 216 SFGIRRNE--KIAVHVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVIL 356
           +F I  N+  ++ ++  S++L  + SLR V  + + + GV   PPR ++
Sbjct: 59  TFDINVNQLNELDLNDSSDQLDSRPSLRRVSSAPDSHKGVEAPPPRPLI 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,889
Number of Sequences: 5004
Number of extensions: 51268
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)