Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30424
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 132 2e-31
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 132 2e-31
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 107 7e-24
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 107 9e-24
02_02_0196 + 7685933-7685961,7686086-7686284 58 8e-09
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 31 1.00
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457... 28 5.3
01_01_0582 - 4317216-4317731 28 5.3
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 27 9.3
04_04_1180 - 31519713-31521419,31522308-31522533,31524097-31524215 27 9.3
02_05_0030 + 25209067-25209130,25209231-25209400,25210482-252116... 27 9.3
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 132 bits (319), Expect = 2e-31
Identities = 63/90 (70%), Positives = 69/90 (76%)
Frame = +2
Query: 239 KDCCPCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 418
K C TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 419 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHR 508
G+DFYVVL R G+ VA RRR +VG HR
Sbjct: 126 GMDFYVVLERAGYRVARRRRCKSRVGIQHR 155
Score = 107 bits (257), Expect = 7e-24
Identities = 52/69 (75%), Positives = 58/69 (84%)
Frame = +3
Query: 51 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 230
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62
Query: 231 RNEKIAVHV 257
RNEKIA +V
Sbjct: 63 RNEKIACYV 71
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +1
Query: 493 GISPPLTKEDAMKWFQQKYDGIILN 567
GI +TKEDAMKWFQ KY+G+ILN
Sbjct: 151 GIQHRVTKEDAMKWFQVKYEGVILN 175
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 132 bits (319), Expect = 2e-31
Identities = 63/90 (70%), Positives = 69/90 (76%)
Frame = +2
Query: 239 KDCCPCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 418
K C TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 419 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHR 508
G+DFYVVL R G+ VA RRR +VG HR
Sbjct: 126 GMDFYVVLERAGYRVARRRRCKSRVGIQHR 155
Score = 107 bits (256), Expect = 9e-24
Identities = 52/69 (75%), Positives = 58/69 (84%)
Frame = +3
Query: 51 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 230
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKQANPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62
Query: 231 RNEKIAVHV 257
RNEKIA +V
Sbjct: 63 RNEKIACYV 71
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +1
Query: 493 GISPPLTKEDAMKWFQQKYDGIILN 567
GI +TKEDAMKWFQ KY+G+ILN
Sbjct: 151 GIQHRVTKEDAMKWFQVKYEGVILN 175
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 107 bits (257), Expect = 7e-24
Identities = 52/69 (75%), Positives = 58/69 (84%)
Frame = +3
Query: 51 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 230
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62
Query: 231 RNEKIAVHV 257
RNEKIA +V
Sbjct: 63 RNEKIACYV 71
Score = 68.9 bits (161), Expect = 3e-12
Identities = 42/92 (45%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = +2
Query: 239 KDCCPCTVRGAKAEEILERGLKVREYELRRDNF--SATGNFGFGIQEHIDLGIKYDPSIG 412
K C TVRG KA ++LE GLK+ DN S T + + +YDPS G
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKIIRIV---DNLIPSVTRSTRAKRINLSNQCFRYDPSTG 122
Query: 413 IYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHR 508
IYG+DFYVVL R G+ VA RRR +VG HR
Sbjct: 123 IYGMDFYVVLERAGYRVARRRRCKSRVGIQHR 154
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +1
Query: 493 GISPPLTKEDAMKWFQQKYDGIILN 567
GI +TKEDAMKWFQ KY+G+ILN
Sbjct: 150 GIQHRVTKEDAMKWFQVKYEGVILN 174
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 107 bits (256), Expect = 9e-24
Identities = 52/69 (75%), Positives = 58/69 (84%)
Frame = +3
Query: 51 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 230
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 29 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 88
Query: 231 RNEKIAVHV 257
RNEKIA +V
Sbjct: 89 RNEKIACYV 97
Score = 78.6 bits (185), Expect = 4e-15
Identities = 38/52 (73%), Positives = 41/52 (78%)
Frame = +2
Query: 239 KDCCPCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 394
K C TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 92 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 57.6 bits (133), Expect = 8e-09
Identities = 25/38 (65%), Positives = 28/38 (73%)
Frame = +2
Query: 395 YDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHR 508
YDPS GIYG+DFYVVL R G+ VA RRR +VG HR
Sbjct: 11 YDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHR 48
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +1
Query: 493 GISPPLTKEDAMKWFQQKYDGIILN 567
GI +TKEDAMKWFQ KY+G+ILN
Sbjct: 44 GIQHRVTKEDAMKWFQVKYEGVILN 68
>02_05_1074 - 33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 30.7 bits (66), Expect = 1.00
Identities = 17/35 (48%), Positives = 17/35 (48%)
Frame = -1
Query: 321 NSYSLTFKPLSRISSALAPRTVHGQQSFHYDGYQK 217
N SL K S SSA VHG SF YDG K
Sbjct: 953 NDVSLNIKDFSSASSAYISSAVHGSSSF-YDGVPK 986
>11_04_0418 -
17443989-17444082,17445153-17445406,17445709-17445783,
17446156-17446377,17446789-17446941,17447031-17447167,
17447615-17447933
Length = 417
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 239 KDCCPCTVRGAKAEEILERGLK 304
K C TVRG KA ++LE GLK
Sbjct: 281 KIACYVTVRGEKAMQLLESGLK 302
>01_01_0582 - 4317216-4317731
Length = 171
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -3
Query: 232 RRIPKDRTVYLALENTGCCPVSCSNTLAARVSLSPDSPTQMF 107
RRI ++ + L TGC P S S AARV S Q F
Sbjct: 98 RRILRENKKRILLCATGCVPASSSAAAAARVPYDAYSYAQNF 139
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 239 KDCCPCTVRGAKAEEILERGLK 304
K C TVRG KA ++LE GLK
Sbjct: 404 KIACYVTVRGEKAMQLLEIGLK 425
>04_04_1180 - 31519713-31521419,31522308-31522533,31524097-31524215
Length = 683
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = -1
Query: 519 FLCERWGNPTFPVLRLLCATLKPG 448
F CERWG PT PV L L PG
Sbjct: 244 FYCERWGIPTPPV--TLNGPLVPG 265
>02_05_0030 +
25209067-25209130,25209231-25209400,25210482-25211668,
25211695-25212011,25212669-25213374,25214248-25215448
Length = 1214
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 397 RSLNWNLWTGLLRRTWPARFQRSTQKA*DRKSGISPPLTKEDA 525
R LN +LW + W +RS A R+ G S PL++ +
Sbjct: 605 RGLNADLWLVVNEAQWRHGLRRSDGGAASREGGSSKPLSRSQS 647
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,534,644
Number of Sequences: 37544
Number of extensions: 325585
Number of successful extensions: 881
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -