Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30424
(630 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0) 156 1e-38
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87) 29 3.1
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 28 5.4
SB_30000| Best HMM Match : rve (HMM E-Value=2.4e-11) 28 5.4
SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11) 28 5.4
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08) 28 7.2
SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_52095| Best HMM Match : tRNA-synt_2c (HMM E-Value=0) 27 9.5
SB_8716| Best HMM Match : LTXXQ (HMM E-Value=5) 27 9.5
SB_7224| Best HMM Match : TIL (HMM E-Value=8.2) 27 9.5
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
Length = 260
Score = 156 bits (379), Expect = 1e-38
Identities = 69/85 (81%), Positives = 78/85 (91%)
Frame = +2
Query: 254 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 433
CTVRG KAEEILE+GLKV+EYEL + FSATGNFGFGIQEHIDLGIKYDPSIGIYG+DF+
Sbjct: 64 CTVRGPKAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFF 123
Query: 434 VVLGRPGFNVAHRRRKTGKVGFPHR 508
VVLGRPGFN++ R+ K G+VGFPHR
Sbjct: 124 VVLGRPGFNISKRKHKQGRVGFPHR 148
Score = 116 bits (280), Expect = 1e-26
Identities = 56/62 (90%), Positives = 58/62 (93%)
Frame = +3
Query: 69 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 248
N M+ L IRKL LNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI+
Sbjct: 2 NPMKELRIRKLVLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIS 61
Query: 249 VH 254
VH
Sbjct: 62 VH 63
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 454 FQRSTQKA*DRKSGISPPLTKEDAMKWFQQK 546
F S +K + G LTK+DAMKWFQQK
Sbjct: 131 FNISKRKHKQGRVGFPHRLTKDDAMKWFQQK 161
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 130 VTG*LVPPRCWSNSQDNSLYFP 195
VT LVPP W+ SQD +Y+P
Sbjct: 742 VTPPLVPPMPWTGSQDAGMYYP 763
>SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87)
Length = 770
Score = 29.1 bits (62), Expect = 3.1
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Frame = -3
Query: 454 TWPAKYDVKVQSINSN*GIVLDTQVNVFLNTEAKITRGGE--VVTPQFIFSDFQTPLKDF 281
+W A ++ Q + QV+ NT R + + TP + D +TP +D
Sbjct: 144 SWNAIDSLRAQKVRQMEHAQTRQQVSPGSNTHLNSRREQDPNIATPASLRGDTETPARDH 203
Query: 280 FCFSSSDCTWTAIFSLRRIPKDRTVYLALENTGCCPVSCSNTLAARVSLSPDSPT 116
S T ++I S R + + E +G P TL + +PD+PT
Sbjct: 204 MTSQSGQSTPSSILSERFLLQSPFKDAEPETSG-SPYQRVFTLDSPTVSTPDNPT 257
>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 274 FSSSDC-TWTAIFSLRRIPKD-RTVYLALENTGCCPVSCSNTLAAR 143
F SS C W A+ LR+IP D RTV++ G C L+ R
Sbjct: 858 FGSSGCFLWFALLCLRKIPYDSRTVWMNWCMFGACAAGIPIMLSFR 903
>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 403
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -1
Query: 363 PKPKLPVAEKLSRRNSYSL-TFKPLSRISSALAPRTVHGQQSFHY 232
P P++P + L + L T+KPL RIS++L+ ++ S+ Y
Sbjct: 303 PLPRIPTSLSLVSLQAPPLYTYKPLPRISTSLSLVSLQASPSYPY 347
>SB_30000| Best HMM Match : rve (HMM E-Value=2.4e-11)
Length = 880
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3
Query: 550 HISVGTTS*HLPL*AVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 416
H+ V T H PL A+ K H + PS+ + KYD+ ++ +
Sbjct: 533 HVQVHTD--HKPLEAIFKKHLASAPPSIARMMLRIQKYDIDIRYV 575
>SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)
Length = 237
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -3
Query: 574 LGY*V*YHHISVGTTS*HLPL*AVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 416
L Y V H++V S H PL A+ K H S P + + KYDV ++ +
Sbjct: 146 LNYYVYGRHVTV--QSDHKPLEAIFKKHISSAPPRIARMMLRIQKYDVNMKYV 196
>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
Length = 551
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 323 RRDNFSATGNFGFGIQEHIDLGIKYD 400
++ ++SATG+F ++EHI G + D
Sbjct: 306 KKSHYSATGSFDGSVEEHISEGAQED 331
>SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 129 GDRLTRAAKVLEQLTGQQPVFSKARY 206
G R TR A +QLT + VFSK Y
Sbjct: 66 GSRRTRTAFTHQQLTALEKVFSKTHY 91
>SB_52095| Best HMM Match : tRNA-synt_2c (HMM E-Value=0)
Length = 756
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 286 DFFCFSSSDCTWTAIFSLRRIPKDRTVYLALENTGCCPVSCSN 158
DFF + D W + + ++PK+R +Y+ GC V C N
Sbjct: 145 DFFKKGAIDFAWEFLTEVLKVPKER-LYVTYFG-GCDGVECDN 185
>SB_8716| Best HMM Match : LTXXQ (HMM E-Value=5)
Length = 263
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +3
Query: 117 VGESGDRLTRAAKVLEQ----LTGQQPVFSKARYTVRSFGIRRNEKIAVHVQSEELKQKK 284
VG SG L+ K Q +T F K RY + G++ + I V +ELK++K
Sbjct: 13 VGSSGAILSPEQKAAFQSSLVITRCNYKFEKVRYWGKILGVKNDYFIIQGVGKDELKERK 72
Query: 285 SL 290
+L
Sbjct: 73 TL 74
>SB_7224| Best HMM Match : TIL (HMM E-Value=8.2)
Length = 147
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/69 (26%), Positives = 25/69 (36%)
Frame = -1
Query: 477 RLLCATLKPGRXXXXXXXXXXXXIEGSYLIPKSMCS*IPKPKLPVAEKLSRRNSYSLTFK 298
R C T+KP IP C K K P+++ L YS+ F+
Sbjct: 77 RCYCLTVKPCGSKISADPRICPENVADRRIPPLECDIQAKIKTPISKTLLHVRLYSIVFR 136
Query: 297 PLSRISSAL 271
P S+L
Sbjct: 137 PTKTQKSSL 145
>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 363 PKPKLPVAEKLSRRNSYSLTFKPLSRISSALAPRTVHG 250
PK P+A++L RNS SL + +S L+P V G
Sbjct: 1347 PKGSSPLAKELRMRNSESLRCRGRLSVSLRLSPARVCG 1384
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,022,425
Number of Sequences: 59808
Number of extensions: 392209
Number of successful extensions: 1059
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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