Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30424
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   145   2e-35
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   141   4e-34
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    30   1.2  
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    29   3.6  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    29   3.6  
U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U80027-17|AAC48114.1|   90|Caenorhabditis elegans Hypothetical p...    27   8.4  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  145 bits (352), Expect = 2e-35
 Identities = 66/89 (74%), Positives = 76/89 (85%)
 Frame = +2

Query: 254 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 433
           CTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDPSIGIYG+DFY
Sbjct: 79  CTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMDFY 138

Query: 434 VVLGRPGFNVAHRRRKTGKVGFPHRSQRK 520
           VVL R G  +A RRR  G+VG  HR +R+
Sbjct: 139 VVLDRAGRRIAKRRRAPGRVGPSHRVERE 167



 Score =  123 bits (297), Expect = 9e-29
 Identities = 60/73 (82%), Positives = 64/73 (87%)
 Frame = +3

Query: 36  KGEEGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 215
           K  E  E  ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR
Sbjct: 6   KQTEIREKKARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVR 65

Query: 216 SFGIRRNEKIAVH 254
           +FGIRRNEKIAVH
Sbjct: 66  TFGIRRNEKIAVH 78



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 16/29 (55%), Positives = 22/29 (75%)
 Frame = +1

Query: 493 GISPPLTKEDAMKWFQQKYDGIILNSQAK 579
           G S  + +E+++KWFQQKYDGIIL  + K
Sbjct: 159 GPSHRVEREESIKWFQQKYDGIILPPKPK 187


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  141 bits (341), Expect = 4e-34
 Identities = 63/89 (70%), Positives = 74/89 (83%)
 Frame = +2

Query: 254 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 433
           CTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDP IGIYG+DFY
Sbjct: 79  CTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFY 138

Query: 434 VVLGRPGFNVAHRRRKTGKVGFPHRSQRK 520
           VVL R G  V+ RRR  G++G  HR  ++
Sbjct: 139 VVLNRNGVRVSKRRRAPGRIGPSHRVDKE 167



 Score =  123 bits (296), Expect = 1e-28
 Identities = 60/73 (82%), Positives = 63/73 (86%)
 Frame = +3

Query: 36  KGEEGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 215
           K  E  E   +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR
Sbjct: 6   KQTEIREKKGRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVR 65

Query: 216 SFGIRRNEKIAVH 254
           +FGIRRNEKIAVH
Sbjct: 66  TFGIRRNEKIAVH 78



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +1

Query: 493 GISPPLTKEDAMKWFQQKYDGIILNSQAK 579
           G S  + KE+ +KWFQQKYDGIIL  + K
Sbjct: 159 GPSHRVDKEETIKWFQQKYDGIILPPKPK 187


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 257 TVRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 415
           ++R   AEE+  RG  +  Y E+RR     TG FG G +  +   I +  S+ +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
            domain protein 1 protein.
          Length = 1346

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 174  GQQPVFSKARYTVRSFGIRRNEKIAVHVQSEELKQKKSLRGV*KSENMNCGVTTSPP-RV 350
            G  P F  A+  V+ F  ++ ++  V   +E   Q  S+  + +S+ +N G+T  PP  V
Sbjct: 856  GAVPTFD-AKKIVQLFETKKEKEAPVKKVAETKTQTLSVLPLKRSQAINIGLTKLPPINV 914

Query: 351  ILASVFK 371
            I A++ K
Sbjct: 915  IPAAIMK 921


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin protein.
          Length = 1346

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 174  GQQPVFSKARYTVRSFGIRRNEKIAVHVQSEELKQKKSLRGV*KSENMNCGVTTSPP-RV 350
            G  P F  A+  V+ F  ++ ++  V   +E   Q  S+  + +S+ +N G+T  PP  V
Sbjct: 856  GAVPTFD-AKKIVQLFETKKEKEAPVKKVAETKTQTLSVLPLKRSQAINIGLTKLPPINV 914

Query: 351  ILASVFK 371
            I A++ K
Sbjct: 915  IPAAIMK 921


>U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical
           protein F18F11.3 protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 398 DPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRSQRKM 523
           DP  GI G+  + V G   F +A R+  +GK     R  +K+
Sbjct: 160 DPDTGISGISRFSVEGDSSFTLAKRKCSSGKCSTQLRLAKKL 201


>U80027-17|AAC48114.1|   90|Caenorhabditis elegans Hypothetical
           protein T28A11.4 protein.
          Length = 90

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 264 RTVH-GQQSFHYDGYQKTALYT*PWKIQAVVL*VAPTPWRHESACHRIHQ 118
           RTV  G+Q+FH++G +K A     WK       V P+ ++  S+  +IHQ
Sbjct: 46  RTVAAGEQTFHFNGPEKGAFLDSDWKE------VDPSNYQMGSSHQKIHQ 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,281,883
Number of Sequences: 27780
Number of extensions: 284405
Number of successful extensions: 781
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)