Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30424
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)           135   3e-32
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)           134   5e-32
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)           134   5e-32
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)           134   5e-32
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo...   134   5e-32
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi...    37   0.013
At4g01310.1 68417.m00171 ribosomal protein L5 family protein con...    36   0.022
At4g30990.1 68417.m04398 expressed protein ; expression supporte...    29   1.9  
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi...    29   3.4  
At4g14280.1 68417.m02201 hypothetical protein                          28   5.9  
At2g16950.1 68415.m01953 importin beta-2 subunit family protein ...    28   5.9  
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00...    27   7.8  

>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
          Length = 172

 Score =  135 bits (326), Expect = 3e-32
 Identities = 64/90 (71%), Positives = 70/90 (77%)
 Frame = +2

Query: 239 KDCCPCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 418
           K  C  TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 56  KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 115

Query: 419 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHR 508
           G+DFYVVL RPG+ VA RRR   +VG  HR
Sbjct: 116 GMDFYVVLERPGYRVARRRRCKARVGIQHR 145



 Score =  102 bits (245), Expect = 2e-22
 Identities = 49/61 (80%), Positives = 56/61 (91%)
 Frame = +3

Query: 75  MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 254
           MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1   MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60

Query: 255 V 257
           V
Sbjct: 61  V 61



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +1

Query: 493 GISPPLTKEDAMKWFQQKYDGIILN 567
           GI   +TK+DAMKWFQ KY+G+ILN
Sbjct: 141 GIQHRVTKDDAMKWFQVKYEGVILN 165


>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 
          Length = 182

 Score =  134 bits (324), Expect = 5e-32
 Identities = 64/90 (71%), Positives = 70/90 (77%)
 Frame = +2

Query: 239 KDCCPCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 418
           K  C  TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66  KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125

Query: 419 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHR 508
           G+DFYVVL RPG+ VA RRR   +VG  HR
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVGIQHR 155



 Score =  106 bits (255), Expect = 1e-23
 Identities = 52/69 (75%), Positives = 59/69 (85%)
 Frame = +3

Query: 51  SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 230
           SE    N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3   SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62

Query: 231 RNEKIAVHV 257
           RNEKIA +V
Sbjct: 63  RNEKIACYV 71



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +1

Query: 493 GISPPLTKEDAMKWFQQKYDGIILN 567
           GI   +TK+DAMKWFQ KY+G+ILN
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEGVILN 175


>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 
          Length = 172

 Score =  134 bits (324), Expect = 5e-32
 Identities = 64/90 (71%), Positives = 70/90 (77%)
 Frame = +2

Query: 239 KDCCPCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 418
           K  C  TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 56  KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 115

Query: 419 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHR 508
           G+DFYVVL RPG+ VA RRR   +VG  HR
Sbjct: 116 GMDFYVVLERPGYRVARRRRCKTRVGIQHR 145



 Score =  102 bits (245), Expect = 2e-22
 Identities = 49/61 (80%), Positives = 56/61 (91%)
 Frame = +3

Query: 75  MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 254
           MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1   MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60

Query: 255 V 257
           V
Sbjct: 61  V 61



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +1

Query: 493 GISPPLTKEDAMKWFQQKYDGIILN 567
           GI   +TK+DAMKWFQ KY+G+ILN
Sbjct: 141 GIQHRVTKDDAMKWFQVKYEGVILN 165


>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
          Length = 182

 Score =  134 bits (324), Expect = 5e-32
 Identities = 64/90 (71%), Positives = 70/90 (77%)
 Frame = +2

Query: 239 KDCCPCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 418
           K  C  TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66  KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125

Query: 419 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHR 508
           G+DFYVVL RPG+ VA RRR   +VG  HR
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVGIQHR 155



 Score =  106 bits (255), Expect = 1e-23
 Identities = 52/69 (75%), Positives = 59/69 (85%)
 Frame = +3

Query: 51  SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 230
           SE    N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3   SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62

Query: 231 RNEKIAVHV 257
           RNEKIA +V
Sbjct: 63  RNEKIACYV 71



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +1

Query: 493 GISPPLTKEDAMKWFQQKYDGIILN 567
           GI   +TK+DAMKWFQ KY+G+ILN
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEGVILN 175


>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
           ribosomal protein L11, cytosolic, Arabidopsis thaliana,
           PIR:S49033
          Length = 182

 Score =  134 bits (324), Expect = 5e-32
 Identities = 64/90 (71%), Positives = 70/90 (77%)
 Frame = +2

Query: 239 KDCCPCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 418
           K  C  TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66  KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125

Query: 419 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHR 508
           G+DFYVVL RPG+ VA RRR   +VG  HR
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVGIQHR 155



 Score =  106 bits (255), Expect = 1e-23
 Identities = 52/69 (75%), Positives = 59/69 (85%)
 Frame = +3

Query: 51  SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 230
           SE    N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3   SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62

Query: 231 RNEKIAVHV 257
           RNEKIA +V
Sbjct: 63  RNEKIACYV 71



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +1

Query: 493 GISPPLTKEDAMKWFQQKYDGIILN 567
           GI   +TK+DAMKWFQ KY+G+ILN
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEGVILN 175


>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 665

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
 Frame = +2

Query: 281 EILERGLKVREYELRR--DNFSATGNFGFGIQEH---IDLGIKYDPSIGIYGLDFYVVLG 445
           E+LE+GLK  EY +       S +G  G GI+ H   +D GIK D +IG   +D Y   G
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342


>At4g01310.1 68417.m00171 ribosomal protein L5 family protein
           contains Pfam profiles PF00673: ribosomal L5P family
           C-terminus, PF00281: ribosomal protein L5
          Length = 262

 Score = 35.9 bits (79), Expect = 0.022
 Identities = 17/66 (25%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
 Frame = +3

Query: 69  NVMRNLHIRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 239
           N+ +   ++K+ +N  +G++      L  A K +  +TGQ+P+ ++AR ++ +F IR ++
Sbjct: 79  NIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQ 138

Query: 240 KIAVHV 257
            + + V
Sbjct: 139 PLGIAV 144


>At4g30990.1 68417.m04398 expressed protein ; expression supported
           by MPSS
          Length = 2138

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = -2

Query: 254 MDSNLFIT-TDTKRPHCIPSLGKYRLLSCELLQHLGGTS----QPVTGFTNTDVQAKLSD 90
           +DS+L I    T R H   S GKY+L+    L  L GT+      +TG  ++D++  LS 
Sbjct: 465 VDSSLLICFKKTLRQHLAVSDGKYQLMIHSFLHSLLGTTLRSCYKMTGINHSDLEEALSF 524

Query: 89  MK 84
            K
Sbjct: 525 AK 526


>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 748

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 278 EEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLGIKYDPSIGIYGLDFYVVL 442
           E+ +E  L+ RE  L+ D F+  G  GF G +  +DLG      + + GL   V L
Sbjct: 130 EQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFL 185


>At4g14280.1 68417.m02201 hypothetical protein
          Length = 798

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 375 TLTWVSSTIPQLEFMDWTFTS 437
           T TW SS +P L +  W F S
Sbjct: 167 TRTWKSSDVPMLPYTGWVFVS 187


>At2g16950.1 68415.m01953 importin beta-2 subunit family protein
           similar to SP|Q92973 Importin beta-2 subunit
           (Transportin) {Homo sapiens}; contains Pfam profile
           PF03810: Importin-beta N-terminal domain
          Length = 891

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +3

Query: 45  EGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKAR 203
           EG     +++++  ++R L LN C+ E+ D    A  ++  L    PV+ + R
Sbjct: 650 EGLGSGIESLVQQSNLRDLLLNCCIDEAADVRQSAFALMGDLARVFPVYLQPR 702


>At3g06210.1 68416.m00714 expressed protein contains Prosite
           PS00616: Histidine acid phosphatases phosphohistidine
           signature;
          Length = 840

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 324 GVTTSPPRVILASVF--KNTLTWVSSTIPQLEFMDWTFTSYLAGQV 455
           G+  +  R+    +F  + TLTW +S +P L +  W + S    ++
Sbjct: 182 GLREATTRIGRQEIFDRRTTLTWKNSEVPLLPYARWLYISSYVSRI 227


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,591,223
Number of Sequences: 28952
Number of extensions: 267959
Number of successful extensions: 765
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)