Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30421
         (581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)                       33   0.13 
SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)                 32   0.39 
SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.8  

>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 2538

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +1

Query: 346 GEKCLAKWRADGMFXEALIXEVLED---XLXVKFDGYTTLEVVSLTDIKPL 489
           G  C AK+  DG +  ALI + L D    + VKF  Y  ++   LTD++ L
Sbjct: 278 GYPCCAKFTEDGCWYRALITKDLRDASGFIEVKFMDYGNIQRTPLTDVREL 328



 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 340 IIGEKCLAKWRADGMFXEALIXEVLED-XLXVKFDGYTTLEVVSLTDIKPL 489
           ++G+ C AK+  D  +  A++ EV E   + V+F  Y   E +    IK L
Sbjct: 510 VVGDICCAKFSEDDCWYRAIVTEVQESKKVGVQFIDYGNCESLPPKRIKKL 560


>SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)
          Length = 1282

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 346 GEKCLAKWRADGMFXEALIXEVLEDXLXVKFDGYTTLEVVSLTDIKPL 489
           G+ C A++ AD  +  A I    ED + V+F  Y   E V ++ +K +
Sbjct: 95  GQACCAQYSADEQWYRAEILSTSEDGVYVRFVDYGNEETVPVSKVKEI 142


>SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 343 IGEKCLAKWRADGMFXEALIXEVLEDXLXVKFDGYTTLEVVSLTDI 480
           +GE   AKW     F EA++  V +    V+F G     +V  +D+
Sbjct: 74  VGETVYAKWPGSTKFYEAVVKSVDKAKCEVEFKGEEYETLVPFSDV 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,294,050
Number of Sequences: 59808
Number of extensions: 189880
Number of successful extensions: 310
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)