Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30421
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.9  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 469 LTDIKPLNSGSKRHIVLMRANMAK 540
           +  I P+N  +K +I  +++NMAK
Sbjct: 33  INSINPINVYTKAYIYTIKSNMAK 56


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 254 LVLVIVMMLQRPCWLQRNEIL 316
           LV V  ++ +RP   QRNEIL
Sbjct: 271 LVTVEPILTERPSDRQRNEIL 291


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = +2

Query: 293 WLQRNEILQLGTILNGLLAKNVWQNGELMECFXR 394
           W Q   +++   ++ G    N W NG     F R
Sbjct: 384 WRQIYNMVRFRNLVKGTKIDNWWDNGSNQIAFSR 417


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +1

Query: 277 VTAXLLAAEERDPATRHYSKWI 342
           +T  +L    R P+T + S W+
Sbjct: 329 ITVCVLNVHFRSPSTHNMSPWV 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,276
Number of Sequences: 438
Number of extensions: 1898
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)