Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30420
         (621 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...   111   5e-27
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...   106   1e-25

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score =  111 bits (267), Expect = 5e-27
 Identities = 52/85 (61%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
 Frame = +3

Query: 3   TFRDLSAQGNDPRRND-LTTFNYCGCGWPQHMLVPKGTEAGMPFQLFVMLSNYDLDRIDQ 179
           TFR+L A  N P   D L+ FN+CGCGWPQHML+PKGTEAG P  LFVM+SNY  DR++Q
Sbjct: 556 TFRNLDA--NRPTGGDALSEFNFCGCGWPQHMLLPKGTEAGYPCHLFVMISNYADDRVEQ 613

Query: 180 DDGKQLTCVEASSFCGLKDKKYPDR 254
           D     TC +  +FCG+KDK YPDR
Sbjct: 614 DTSG--TCSDGDTFCGIKDKLYPDR 636


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score =  106 bits (255), Expect = 1e-25
 Identities = 50/85 (58%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
 Frame = +3

Query: 3   TFRDLSAQGNDPRRND-LTTFNYCGCGWPQHMLVPKGTEAGMPFQLFVMLSNYDLDRIDQ 179
           TFR+L    N P+  + L  FN+CGCGWPQHML+PKGT  GM  QLFVM+SNYD D+IDQ
Sbjct: 557 TFRNLDL--NRPQGGEELAQFNFCGCGWPQHMLIPKGTPEGMKSQLFVMISNYDDDKIDQ 614

Query: 180 DDGKQLTCVEASSFCGLKDKKYPDR 254
               +  C +A S+CG+KDK YPDR
Sbjct: 615 --STEGVCNDAGSYCGIKDKLYPDR 637



 Score = 44.8 bits (101), Expect = 6e-07
 Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
 Frame = +2

Query: 257 AMGFPFDR-PSSSATSLQDFILPNMGLQDITIQLQNVT-EPNPRN 385
           +MG+PFDR P +   +LQ F+ PNM +QD+TI+  + T  P  RN
Sbjct: 639 SMGYPFDRMPRNGVDTLQQFLTPNMRVQDVTIKFSDRTVRPKQRN 683


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,873
Number of Sequences: 336
Number of extensions: 3085
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)