Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30420
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172...    29   2.3  
08_01_0897 - 8839134-8839718                                           29   3.9  
02_05_0929 - 32798477-32798679,32798833-32798917                       28   5.2  
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159...    28   6.9  
08_02_1101 - 24308433-24308978,24309195-24309364,24309443-243095...    27   9.1  
03_02_0760 + 10960381-10960461,10960740-10961003,10961334-109616...    27   9.1  
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610...    27   9.1  

>12_01_0227 -
           1718726-1721183,1721804-1721957,1722090-1722165,
           1722327-1722485,1722552-1722662,1722791-1722841,
           1722948-1723192,1723745-1725278
          Length = 1595

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 49  TSLPSITAAAAGPSTCSCPRALKPACPSNCSLCYP 153
           T  PSI AAA GP        L+P  P+  ++ YP
Sbjct: 517 TVRPSIQAAAPGPRWLRLAATLRPISPATAAVRYP 551


>08_01_0897 - 8839134-8839718
          Length = 194

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 70  AAAAGPSTCSCPRALKPACPSNCSLCYPT 156
           A AAG S    P +L+P  PS  S+ +PT
Sbjct: 158 AVAAGGSPAPAPSSLRPRRPSGMSIKWPT 186


>02_05_0929 - 32798477-32798679,32798833-32798917
          Length = 95

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 4   HSATYPLRAMILDATTSLPSITAAAAGPS--TCSCPRALKPACPS 132
           H+A   L AM+L A++S   + A  AGP     +C   L P  PS
Sbjct: 11  HAALLLLLAMVLVASSSSGVMAAKIAGPKYFQDTCSAVLNPGAPS 55


>07_01_0214 +
           1595917-1596526,1597127-1597140,1598414-1598743,
           1598853-1598963,1599113-1599269,1603366-1603619,
           1603762-1603960,1604341-1604498
          Length = 610

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -3

Query: 121 PASVPLGTSMCWGQPQPQ*LKVVRSLRRGSL 29
           P+S+PL +S  +GQP P   ++ R +R+ SL
Sbjct: 96  PSSLPLPSSTRFGQPDPLAGRLGRQIRKPSL 126


>08_02_1101 -
           24308433-24308978,24309195-24309364,24309443-24309542,
           24310337-24310500,24310960-24310996,24311222-24311262,
           24313877-24314093
          Length = 424

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 321 QTWACRTSLFNCKTSPNLTHGTLPCQ 398
           + W  R+S  +C  +P   +G LPC+
Sbjct: 69  EEWEGRSSSVDCPVTPRKMYGNLPCR 94


>03_02_0760 +
           10960381-10960461,10960740-10961003,10961334-10961619,
           10961637-10962394
          Length = 462

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +1

Query: 4   HSATYPLRAMILDATTSLPSITAAAAGPSTCSCPRALKPACPSNCSLCYPTMI 162
           +SA+    A   DA  S  S T    G +  S P  L+PA     S   PT++
Sbjct: 235 NSASAASLATTRDAAASSASATTRDGGTAAASSPTVLRPAHVGAASSSSPTVL 287


>02_05_0490 +
           29456825-29457499,29458771-29459057,29460922-29461039,
           29461451-29461972,29462058-29462170,29463033-29463053,
           29463726-29463960,29464218-29464381,29464695-29464776,
           29465077-29465166,29465625-29465858,29466347-29466418,
           29466857-29467000,29467573-29467659,29467940-29468098,
           29469216-29469476,29469789-29469836
          Length = 1103

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 7   SATYPLRAMILDATTSLPSITAAAAGPSTCSCP 105
           +AT  ++A++     S   + AAA GP+ CS P
Sbjct: 277 AATAVIQALMAADEASAAGVAAAADGPAACSLP 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,421,197
Number of Sequences: 37544
Number of extensions: 357447
Number of successful extensions: 1020
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)