Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30420
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)                  30   1.7  
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)                 28   7.0  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_35182| Best HMM Match : CUB (HMM E-Value=0)                         28   7.0  
SB_21682| Best HMM Match : Aconitase (HMM E-Value=2e-07)               28   7.0  
SB_12475| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)
          Length = 550

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 246 PDRALWDSRSTDLQAAPPASRTSFYQTWACRTSLFNC 356
           PDR    +R   ++A  P++R   Y TW+ RTS  +C
Sbjct: 438 PDRMDVMTREEIVRAFAPSARLQPYTTWSPRTSALHC 474


>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1967

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 357 CN*IVMSCKPMFGRMKSWRLVALLEGRSNGNPI 259
           C+  V+ CKP  G    W+ + +    S G+PI
Sbjct: 40  CDDYVIECKPRAGSNDQWKFIRITHMDSGGHPI 72


>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
          Length = 530

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 58  PSITAAAAGPSTCSCPRALKPACPSNC 138
           P  T AA G    +CP +  PAC   C
Sbjct: 322 PYATQAAQGVCPAACPSSCAPACTPQC 348


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = +3

Query: 231  KDKK--YPDRALWDSRSTDLQAAPPAS---RTSFYQTWACRTSLFNCKTSPNLTH 380
            KD K  +P +A W    T+++  PP+          T+    S F CKT P+  +
Sbjct: 1153 KDVKVDFPQQANWTGLITEMEVVPPSHPGVTCDGCHTFPIEGSRFKCKTCPDFDY 1207


>SB_35182| Best HMM Match : CUB (HMM E-Value=0)
          Length = 963

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = +3

Query: 165 DRIDQDDGKQLTCVEASSFCGLKDKKYPDRALWDSRSTDLQAAPPASRTSFYQTWACRTS 344
           D ++ +DG      E  +FCG K  K   R+  +S    L +    +   F  TW   + 
Sbjct: 152 DSLEINDGPNSKSPELGAFCGTKPPKAAIRSSGNSMYVKLTSDDGDTGKGFRATWRTASR 211

Query: 345 LFNC-KTSPNLTHGTL 389
              C     NLT GT+
Sbjct: 212 DIKCGGVFSNLT-GTM 226


>SB_21682| Best HMM Match : Aconitase (HMM E-Value=2e-07)
          Length = 243

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 143 NEQLEGHAGFSALGHEHVLGP--AAAAVIEGSEVVASRIIALSG 18
           N   EG  GF   G  H++ P  AAAA I   E +  +   ++G
Sbjct: 135 NRNFEGRQGFG--GRTHLVSPAMAAAAAIAAKETIMKKFTQITG 176


>SB_12475| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 648

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 222 CGLKDKKYPDRALWDSRSTDLQAAPPASR 308
           CG+K+K  PD A+  S + D + +P  SR
Sbjct: 499 CGMKNKVIPDSAITASTTWDNRHSPQRSR 527


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,406,727
Number of Sequences: 59808
Number of extensions: 390727
Number of successful extensions: 943
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)