Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30420
(621 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso... 30 1.2
AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical ... 30 1.5
U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor staphylo... 28 4.7
AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical ... 28 6.2
Z82057-4|CAB61024.2| 370|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z81119-10|CAB61032.2| 370|Caenorhabditis elegans Hypothetical p... 27 8.2
L39925-1|AAA98782.1| 370|Caenorhabditis elegans cathepsin B-lik... 27 8.2
L39890-1|AAA98788.1| 370|Caenorhabditis elegans cathepsin B-lik... 27 8.2
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 27 8.2
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 27 8.2
>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 2
protein.
Length = 1086
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 309 TSFYQTWACRTSLFNCKTSPNLTHGTLPCQFKMSQN-*NEIRILNHKFDF 455
T+ Y R +L+N S H LPC ++ +N N++R+L +F +
Sbjct: 827 TNRYSDDFYRAALYNSLASSVFPHDALPCHVELPENLSNDVRVLIKEFTY 876
>AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical
protein Y59A8B.6 protein.
Length = 968
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Frame = +2
Query: 281 PSSSATSLQDFILPNMG--LQDIT---IQLQNVTEPNPRNPP 391
P T +Q I+P MG LQDI + L++V E NPR+PP
Sbjct: 296 PKGYLTDMQS-IIPQMGGDLQDIKKARMLLKSVRETNPRHPP 336
>U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor
staphylococcal nuclease homologprotein 1 protein.
Length = 914
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 296 TSLQDFILPNMGLQDITIQLQNVTEPNPRNP 388
++++ F+LPN + IT+QL V P+ RNP
Sbjct: 206 STVRAFLLPNF--EYITLQLSGVRAPSTRNP 234
>AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical
protein Y39G8B.7 protein.
Length = 179
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +1
Query: 85 PSTCS-CPRALKPACPSNCSLCYP 153
P TC+ CP A P SNC C P
Sbjct: 99 PETCNMCPGATTPTPDSNCKDCSP 122
>Z82057-4|CAB61024.2| 370|Caenorhabditis elegans Hypothetical
protein T10H4.12 protein.
Length = 370
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 85 PSTCSCPRALKPACPSNCSLCYPT 156
P T +CP + P+C + C Y T
Sbjct: 197 PCTKNCPESTTPSCKTTCQSSYKT 220
>Z81119-10|CAB61032.2| 370|Caenorhabditis elegans Hypothetical
protein T10H4.12 protein.
Length = 370
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 85 PSTCSCPRALKPACPSNCSLCYPT 156
P T +CP + P+C + C Y T
Sbjct: 197 PCTKNCPESTTPSCKTTCQSSYKT 220
>L39925-1|AAA98782.1| 370|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 370
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 85 PSTCSCPRALKPACPSNCSLCYPT 156
P T +CP + P+C + C Y T
Sbjct: 197 PCTKNCPESTTPSCKTTCQSSYKT 220
>L39890-1|AAA98788.1| 370|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 370
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 85 PSTCSCPRALKPACPSNCSLCYPT 156
P T +CP + P+C + C Y T
Sbjct: 197 PCTKNCPESTTPSCKTTCQSSYKT 220
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 267 SRSTDLQAAPPASRTSFYQTWACRTSLFNCK 359
SRS +AAPP + S TW+ +T F K
Sbjct: 1567 SRSRSREAAPPPQQRSRNSTWSEQTDTFLAK 1597
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 267 SRSTDLQAAPPASRTSFYQTWACRTSLFNCK 359
SRS +AAPP + S TW+ +T F K
Sbjct: 192 SRSRSREAAPPPQQRSRNSTWSEQTDTFLAK 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,646,874
Number of Sequences: 27780
Number of extensions: 295271
Number of successful extensions: 741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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