Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30418
(490 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 103 6e-23
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 100 1e-21
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 100 1e-21
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 98 3e-21
04_03_0471 - 16292916-16293209,16294558-16294803,16297557-162976... 28 4.6
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242... 28 4.6
08_02_1238 + 25486263-25487574,25488210-25489117 27 8.1
03_05_0802 - 27823213-27823701,27823911-27823959,27824053-278241... 27 8.1
03_05_0796 + 27787401-27788831 27 8.1
01_01_0172 + 1485170-1485176,1485480-1485511,1485622-1485870,148... 27 8.1
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 103 bits (248), Expect = 6e-23
Identities = 48/75 (64%), Positives = 59/75 (78%)
Frame = +1
Query: 28 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 207
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377
Query: 208 IGYGSNKKTRHMLPN 252
IGYGS+KKTRH LPN
Sbjct: 378 IGYGSDKKTRHYLPN 392
Score = 38.7 bits (86), Expect = 0.002
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +3
Query: 240 YAPKWFRKVLVHNVKELEILMMQNR 314
Y P F+K +VHNV ELE+LMM NR
Sbjct: 389 YLPNKFKKFVVHNVSELELLMMHNR 413
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 99.5 bits (237), Expect = 1e-21
Identities = 47/71 (66%), Positives = 56/71 (78%)
Frame = +1
Query: 40 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 219
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 220 SNKKTRHMLPN 252
S+KKTRH LPN
Sbjct: 60 SDKKTRHYLPN 70
Score = 79.4 bits (187), Expect = 1e-15
Identities = 37/55 (67%), Positives = 43/55 (78%)
Frame = +3
Query: 240 YAPKWFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 404
Y P F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I ++
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVIS 121
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 99.5 bits (237), Expect = 1e-21
Identities = 47/71 (66%), Positives = 56/71 (78%)
Frame = +1
Query: 40 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 219
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 220 SNKKTRHMLPN 252
S+KKTRH LPN
Sbjct: 60 SDKKTRHYLPN 70
Score = 98.3 bits (234), Expect = 3e-21
Identities = 48/67 (71%), Positives = 53/67 (79%)
Frame = +3
Query: 240 YAPKWFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 419
Y P F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VTN AR
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 126
Query: 420 LRSQENE 440
LRSQE+E
Sbjct: 127 LRSQEDE 133
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 98.3 bits (234), Expect = 3e-21
Identities = 48/67 (71%), Positives = 53/67 (79%)
Frame = +3
Query: 240 YAPKWFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 419
Y P F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VTN AR
Sbjct: 134 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 193
Query: 420 LRSQENE 440
LRSQE+E
Sbjct: 194 LRSQEDE 200
Score = 73.3 bits (172), Expect = 9e-14
Identities = 30/39 (76%), Positives = 36/39 (92%)
Frame = +1
Query: 136 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPN 252
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LPN
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPN 137
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 40 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 132
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>04_03_0471 -
16292916-16293209,16294558-16294803,16297557-16297692,
16297765-16297983,16298194-16298572,16298967-16299225,
16300044-16300114,16300604-16300625
Length = 541
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 234 PSYAPKWFRKVLVHNVKELEILMMQNRKY 320
P Y K++ K+L +N KE+E +M N KY
Sbjct: 327 PEYLKKFYIKLL-NNFKEIEDQVMDNEKY 354
>01_03_0260 - 14323503-14323603,14323751-14323990,14324212-14324275,
14324349-14324654,14324841-14325055,14325551-14325845,
14325965-14326129,14326324-14327352,14333553-14333814,
14334135-14334631,14338714-14340123
Length = 1527
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 177 AVQGSILDAQHWLRFQQEDPSYAPKWFRKV 266
A QGS + A +WL +Q ++ P F KV
Sbjct: 980 AWQGSTMAADYWLAYQTSGDAFRPALFIKV 1009
>08_02_1238 + 25486263-25487574,25488210-25489117
Length = 739
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = -3
Query: 380 GSFHDQLPLL----RRDTMSDLCAVLPVLHHQ 297
G+ H+Q P L RRD ++D+ A L +HH+
Sbjct: 466 GAVHEQRPALSWESRRDIVADVAAGLHYVHHE 497
>03_05_0802 -
27823213-27823701,27823911-27823959,27824053-27824120,
27824208-27824276,27824391-27824460,27824556-27824635,
27824706-27824784,27824949-27825025,27825110-27825176,
27825285-27825381,27825478-27825574,27825701-27825739,
27825843-27825907,27826034-27826142,27826275-27826487
Length = 555
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 326 RDRSWCLFEEAEADRGKSPAAQHQSDECGRSPP 424
+ R++ LF+E D KSP AQ S SPP
Sbjct: 472 KKRAFRLFQEDSLDIRKSPEAQMNSPSSVLSPP 504
>03_05_0796 + 27787401-27788831
Length = 476
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 353 EAEADRGKSPAAQHQSDECGR 415
+ ++D GK QH+ DECG+
Sbjct: 393 DGDSDVGKMKIVQHKCDECGK 413
>01_01_0172 +
1485170-1485176,1485480-1485511,1485622-1485870,
1486350-1487813,1487906-1487959
Length = 601
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 234 PSYAPKWFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAA 413
P +AP++F + + N K L++ R+Y I + +S R V + L I V +
Sbjct: 282 PQWAPEYFGEAITVNGKAWPFLVVHRRRYRLRILN--ASNARYFNVSLSNGLPIHVVGSD 339
Query: 414 A 416
A
Sbjct: 340 A 340
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,273,963
Number of Sequences: 37544
Number of extensions: 245777
Number of successful extensions: 897
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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