Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30418
(490 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 2e-28
SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0) 29 1.6
SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_15291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8) 28 4.7
SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1) 27 6.3
SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035) 27 8.3
>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 122 bits (294), Expect = 2e-28
Identities = 52/70 (74%), Positives = 62/70 (88%)
Frame = +1
Query: 46 IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSN 225
+ PV RP I+KKR K+FIRHQSDRY ++ +WRKP+GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 2 VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 61
Query: 226 KKTRHMLPNG 255
KKTR ++P+G
Sbjct: 62 KKTRFLMPDG 71
Score = 103 bits (246), Expect = 1e-22
Identities = 49/65 (75%), Positives = 56/65 (86%)
Frame = +3
Query: 246 PKWFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 425
P F+K +VHNVKELE+LMM NR Y AEIAH VSS+KRK IVERAQQLSI+VTN+ ARLR
Sbjct: 69 PDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSRKRKAIVERAQQLSIKVTNSNARLR 128
Query: 426 SQENE 440
S+ENE
Sbjct: 129 SEENE 133
>SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 31.1 bits (67), Expect = 0.51
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = -2
Query: 261 YGTIWEHMTGLLVGTVTNV--GHQV--LTLEPPADSVVNTSRFTPIPLKFVIAIRLMPDK 94
YGT M G + T+T++ H+V L +EP A ++ T++FTP + F+ A +
Sbjct: 491 YGTHEGAMYGTKLDTITDIIENHKVAILDVEPQALKILRTAKFTPY-VVFISAPSIKGIN 549
Query: 93 SLRP 82
+RP
Sbjct: 550 DIRP 553
>SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 839
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 213 LRFQQEDPSYAPKWFRKVLVHNVKELEILMMQNRKYCAEIAHG-VSSKKRKLI 368
L+ Q+ PS P+ + +++V ++E E+ RK+C EIA+ V S R+++
Sbjct: 272 LKCQKYWPSANPEEYGRLVVTPLEEEELSHYVIRKFCIEIANSDVESPAREIV 324
>SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 89 RDLSGINRIAMTNLRGIGVNLEVLTTESAGGS 184
+DL I A T+LR +G+N+E+L+ AGGS
Sbjct: 169 KDLMAIVFFA-TDLREVGINIELLSMLPAGGS 199
>SB_15291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 747
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +3
Query: 240 YAPKWFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 419
Y PK K V K ++++ N YCA A SKK +L E+ ++L R + A
Sbjct: 64 YEPKVSAKQRVEEFKGEDLIVRNNEVYCA--ACKEVSKKHELNKEKLKKLGKREEDIAQA 121
Query: 420 LRSQE 434
L +
Sbjct: 122 LHKYD 126
>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = -2
Query: 357 ASSKRHHERSLRSTSCFASSRFPAL*HCELGPYGTIWEHMTGLLVGTVTN---VGHQVLT 187
++ KR+ R + CF ++R + + E+ PY ++ LLV V N +G
Sbjct: 633 SAGKRYGSLRYRHSRCFGAARDSEISYSEVVPYWSVLLRTRALLVEAVRNKYLIGRNCSG 692
Query: 186 LEPPADSVVNTS 151
L P + TS
Sbjct: 693 LVPYWSKLFGTS 704
>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
Length = 361
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 398 SDAELLGSFHDQLPLLRRDTMSDLCAVLPVLHH 300
S+ E GSF D++ RRDT S +C +L H
Sbjct: 300 SETERGGSFLDEVASPRRDTASPVCLWGAILFH 332
>SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)
Length = 550
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 168 SPQAVQGSILDAQHWLRFQQE 230
SP+A+QG ++ AQ W +QE
Sbjct: 151 SPEAIQGFLVSAQEWAIHRQE 171
>SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)
Length = 124
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 366 SASASSKRHHERSLRSTSCFASSRFPAL*HCEL 268
S + +R +RS + ++C AS R P+ CEL
Sbjct: 21 STEHAYQRRTKRSSKESACCASGRMPSRARCEL 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,918,743
Number of Sequences: 59808
Number of extensions: 275905
Number of successful extensions: 1018
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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