Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30418
(490 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B) 100 5e-22
At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B) 100 5e-22
At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A) ribo... 100 5e-22
At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family prot... 30 0.96
At5g41840.1 68418.m05095 F-box family protein contains F-box dom... 27 5.1
At4g07670.1 68417.m01203 protease-associated (PA) domain-contain... 27 5.1
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 27 6.8
At3g07210.1 68416.m00860 expressed protein predicted using genef... 27 6.8
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t... 27 9.0
At3g16520.3 68416.m02110 UDP-glucoronosyl/UDP-glucosyl transfera... 27 9.0
At3g16520.2 68416.m02109 UDP-glucoronosyl/UDP-glucosyl transfera... 27 9.0
At3g16520.1 68416.m02108 UDP-glucoronosyl/UDP-glucosyl transfera... 27 9.0
>At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)
Length = 133
Score = 100 bits (240), Expect = 5e-22
Identities = 45/72 (62%), Positives = 58/72 (80%)
Frame = +1
Query: 40 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 219
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVRR+FKG LMPN+GYG
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59
Query: 220 SNKKTRHMLPNG 255
S+KKTRH LPNG
Sbjct: 60 SDKKTRHYLPNG 71
Score = 94.7 bits (225), Expect = 3e-20
Identities = 43/67 (64%), Positives = 51/67 (76%)
Frame = +3
Query: 240 YAPKWFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 419
Y P F+K +VHN ELE+LMM NR YCAEIAH +S+KKRK IVERA QL + V+N R
Sbjct: 67 YLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGR 126
Query: 420 LRSQENE 440
LRSQE+E
Sbjct: 127 LRSQEDE 133
>At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)
Length = 133
Score = 100 bits (240), Expect = 5e-22
Identities = 45/72 (62%), Positives = 58/72 (80%)
Frame = +1
Query: 40 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 219
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVRR+FKG LMPN+GYG
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59
Query: 220 SNKKTRHMLPNG 255
S+KKTRH LPNG
Sbjct: 60 SDKKTRHYLPNG 71
Score = 94.7 bits (225), Expect = 3e-20
Identities = 43/67 (64%), Positives = 51/67 (76%)
Frame = +3
Query: 240 YAPKWFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 419
Y P F+K +VHN ELE+LMM NR YCAEIAH +S+KKRK IVERA QL + V+N R
Sbjct: 67 YLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGR 126
Query: 420 LRSQENE 440
LRSQE+E
Sbjct: 127 LRSQEDE 133
>At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A)
ribosomal protein L32, human, PIR1:R5HU32
Length = 133
Score = 100 bits (240), Expect = 5e-22
Identities = 45/72 (62%), Positives = 58/72 (80%)
Frame = +1
Query: 40 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 219
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVRR+FKG LMPN+GYG
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59
Query: 220 SNKKTRHMLPNG 255
S+KKTRH LPNG
Sbjct: 60 SDKKTRHYLPNG 71
Score = 97.9 bits (233), Expect = 3e-21
Identities = 46/67 (68%), Positives = 52/67 (77%)
Frame = +3
Query: 240 YAPKWFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 419
Y P F+K +VHN ELE+LMM NR YCAEIAH VS+KKRK IVERA QL + VTN AR
Sbjct: 67 YLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLAR 126
Query: 420 LRSQENE 440
LRSQE+E
Sbjct: 127 LRSQEDE 133
>At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family protein
similar to Anther-specific proline-rich proteins
SP|P40603 SP|P40602 from {Arabidopsis thaliana};
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase
Length = 385
Score = 29.9 bits (64), Expect = 0.96
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +1
Query: 97 IRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGSV 261
+R Q D Y K++R WR G + +R + YL I GSN + L N S+
Sbjct: 146 LRTQLDHYKKVERLWRTNFGKEESKKRISRAVYL---ISIGSNDYSSIFLTNQSL 197
>At5g41840.1 68418.m05095 F-box family protein contains F-box domain
Pfam:PF00646
Length = 540
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 231 DPSYAPKWFRKVLVHNVKELEILMMQNRKYC 323
D S+ +W KVL V ++++ + +R YC
Sbjct: 110 DQSWVLEWIPKVLKRGVLDIDLHITSSRNYC 140
>At4g07670.1 68417.m01203 protease-associated (PA) domain-containing
protein similar to PF02225: PA domain; similar to
N-acetylated-alpha-linked acidic dipeptidase II
(NAALADase II) (SP:Q9Y3Q) {Homo sapiens};similar to
Glutamate carboxypeptidase II (Membrane glutamate
carboxypeptidase) (mGCP) (N-acetylated-alpha-linked
acidic dipeptidase I) (NAALADase I)
(Pteroylpoly-gamma-glutamate
carboxypeptidase)(Folylpoly-gamma-glutamate
carboxypeptidase) (FGCP) (Folate hydrolase 1)
(Prostate-specific membrane antigen homolog) (SP|O77564)
{Sus scrofa}
Length = 280
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 43 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPR 153
A+ P ++ + +K +++H + R DKL++ KPR
Sbjct: 194 AVDPNSGTAVLMEASKSYLQHIAQRLDKLQKRGWKPR 230
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam domain
PF04931: DNA polymerase V
Length = 1306
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 261 KVLVHNVKELEILMMQNRKYCAEIAHGVSSKK 356
K LV N+ E ++ Q RK+C I VSS K
Sbjct: 1242 KELVGNMPEAKVRRAQVRKFCGRIFQMVSSLK 1273
>At3g07210.1 68416.m00860 expressed protein predicted using
genefinder
Length = 547
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 351 SKRHHERSLRSTSCFASSRF 292
S+ HHER RS SC +SSR+
Sbjct: 451 SEFHHERVGRSQSCVSSSRW 470
>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
enhancer of zeste-like protein 1(EZA1) (GI:4185507)
[Arabidopsis thaliana]; similar to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 856
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 27 RNIQDGYKTCLQADNRQKEDE 89
RN+ G KTCL N +E+E
Sbjct: 517 RNLLSGLKTCLDVSNYMRENE 537
>At3g16520.3 68416.m02110 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 462
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 372 PRSASASSKRHHERSLRSTSCFAS 301
P S+S++S+ HHE L CF++
Sbjct: 74 PYSSSSTSRHHHESLLLEILCFSN 97
>At3g16520.2 68416.m02109 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 446
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 372 PRSASASSKRHHERSLRSTSCFAS 301
P S+S++S+ HHE L CF++
Sbjct: 74 PYSSSSTSRHHHESLLLEILCFSN 97
>At3g16520.1 68416.m02108 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 451
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 372 PRSASASSKRHHERSLRSTSCFAS 301
P S+S++S+ HHE L CF++
Sbjct: 74 PYSSSSTSRHHHESLLLEILCFSN 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,732,913
Number of Sequences: 28952
Number of extensions: 192457
Number of successful extensions: 665
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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