Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30417
(616 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes ... 142 5e-33
UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127; Euka... 142 8e-33
UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4; Eukary... 122 9e-27
UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5; Magnol... 113 2e-24
UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protei... 105 8e-22
UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n... 103 4e-21
UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative; n... 100 3e-20
UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1; Guilla... 93 5e-18
UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of cy... 93 5e-18
UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia... 88 1e-16
UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4; Entamoeba|... 82 9e-15
UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7; T... 82 9e-15
UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1; Enceph... 75 1e-12
UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1; O... 73 7e-12
UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;... 70 5e-11
UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2; Neoptera... 66 5e-10
UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus ... 65 1e-09
UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum... 64 2e-09
UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum... 61 2e-08
UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiel... 61 2e-08
UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45; root|... 55 1e-06
UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1; Archae... 52 8e-06
UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1; Methan... 52 1e-05
UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropy... 48 2e-04
UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5; Thermo... 47 4e-04
UniRef50_Q53K43 Cluster: Retrotransposon protein, putative, uncl... 45 0.001
UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11; Eurya... 45 0.002
UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3; Sulfol... 44 0.003
UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 43 0.005
UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured... 42 0.009
UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum ... 42 0.009
UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6; Methan... 41 0.020
UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4; Haloba... 41 0.027
UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 38 0.14
UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1; Cyanidi... 35 1.3
UniRef50_Q4QG46 Cluster: Putative uncharacterized protein; n=2; ... 35 1.8
UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1; ... 34 2.3
UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1; Arabido... 34 2.3
UniRef50_A5BYS2 Cluster: Putative uncharacterized protein; n=3; ... 34 3.1
UniRef50_A5IKR4 Cluster: Putative uncharacterized protein precur... 33 7.1
UniRef50_Q54I73 Cluster: Putative uncharacterized protein; n=1; ... 32 9.4
UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1; Nanoar... 32 9.4
>UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes
aegypti|Rep: 60S ribosomal protein L13a - Aedes aegypti
(Yellowfever mosquito)
Length = 236
Score = 142 bits (345), Expect = 5e-33
Identities = 62/84 (73%), Positives = 74/84 (88%)
Frame = +3
Query: 3 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 182
G S K I+IDGRGHLLGRLA+VIAK +L G KVVVVRCE + +SG+FFRNK+K +++LRK
Sbjct: 3 GLSEKPILIDGRGHLLGRLASVIAKQILNGRKVVVVRCEDLQLSGHFFRNKIKFLAYLRK 62
Query: 183 RCNVNPARGPFHFRAPSKILWKTV 254
RCNVNPARGPFHFRAPS++LWK V
Sbjct: 63 RCNVNPARGPFHFRAPSRMLWKAV 86
Score = 99 bits (238), Expect = 4e-20
Identities = 41/76 (53%), Positives = 51/76 (67%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
RGM+PHKT+RG NAL+ L+ Y+G P PFD CL+P R +C VGR++HE
Sbjct: 87 RGMVPHKTKRGHNALKRLKVYEGIPSPFDRQKRLCVPTAMRQLCLRPDRKFCDVGRVAHE 146
Query: 434 IGWKYRDVVRKLEDKR 481
+GWKYRDVV LE KR
Sbjct: 147 VGWKYRDVVNNLEAKR 162
>UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127;
Eukaryota|Rep: 60S ribosomal protein L13A - Drosophila
melanogaster (Fruit fly)
Length = 205
Score = 142 bits (343), Expect = 8e-33
Identities = 59/84 (70%), Positives = 76/84 (90%)
Frame = +3
Query: 3 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 182
G +N+ +VIDGRGHLLGRLA+V+AK LL+G KV VVRCE++N+SG+F+RNK+K +++LRK
Sbjct: 3 GLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRK 62
Query: 183 RCNVNPARGPFHFRAPSKILWKTV 254
RCNVNPARGPFHFRAPS+I +K V
Sbjct: 63 RCNVNPARGPFHFRAPSRIFYKAV 86
Score = 93.9 bits (223), Expect = 3e-18
Identities = 44/89 (49%), Positives = 54/89 (60%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
RGMIPHKT+RG+ AL LR +DG P P+D L+ R YC VGRLSHE
Sbjct: 87 RGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHE 146
Query: 434 IGWKYRDVVRKLEDKRXGXAVXRVAMKRN 520
+GW Y+DV++ LE KR A RV +K N
Sbjct: 147 VGWHYQDVIKSLERKR--KAKLRVTLKHN 173
Score = 40.3 bits (90), Expect = 0.036
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +1
Query: 508 HEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 603
H ++LK++T A E ++KA PF II+SYGY
Sbjct: 172 HNRELKKLTVKARENIAKAAEPFNKIIKSYGY 203
>UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4;
Eukaryota|Rep: 60S ribosomal protein L13a - Cyanophora
paradoxa
Length = 200
Score = 122 bits (293), Expect = 9e-27
Identities = 53/80 (66%), Positives = 66/80 (82%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 194
K +V+D RGHLLGRLAA +AK LL G +VV VR E+INISG+ FRNKLK +FL+KR N
Sbjct: 4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNT 63
Query: 195 NPARGPFHFRAPSKILWKTV 254
NP RGPFHFR+P++ILW+T+
Sbjct: 64 NPRRGPFHFRSPARILWRTI 83
Score = 87.8 bits (208), Expect = 2e-16
Identities = 39/90 (43%), Positives = 54/90 (60%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
RGMIPHKT RG AL L+ ++G PPP+D LKPGR +C +GRL+ E
Sbjct: 84 RGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATE 143
Query: 434 IGWKYRDVVRKLEDKRXGXAVXRVAMKRNL 523
+GW++ D+V +LE+KR + A K+ L
Sbjct: 144 VGWRHSDLVTRLEEKRKTKSAAFYARKKTL 173
>UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5;
Magnoliophyta|Rep: 60S ribosomal protein L13a - Capsicum
annuum (Bell pepper)
Length = 220
Score = 113 bits (273), Expect = 2e-24
Identities = 49/84 (58%), Positives = 64/84 (76%)
Frame = +3
Query: 3 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 182
G S + IV+D R H+LGRL++++AK LL G +VVVVRCE+I +SG R K+K + FLRK
Sbjct: 6 GISARRIVVDARHHMLGRLSSILAKELLNGQRVVVVRCEEICLSGGLVRQKMKYLRFLRK 65
Query: 183 RCNVNPARGPFHFRAPSKILWKTV 254
R N P+ GP HFRAPSKILW+T+
Sbjct: 66 RMNTKPSHGPIHFRAPSKILWRTI 89
Score = 84.2 bits (199), Expect = 2e-15
Identities = 41/104 (39%), Positives = 56/104 (53%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
RGMIPHKT+RG AL L+ Y+G PPP+D L+ G YC +G+LS E
Sbjct: 90 RGMIPHKTKRGAAALARLKVYEGVPPPYDKIKRMVIPDALKVLRLQAGHKYCLLGKLSSE 149
Query: 434 IGWKYRDVVRKLEDKRXGXAVXRVAMKRNLRGSPRMLVRRCRRR 565
+GW + D +++LEDKR A ++ L R+ R RR
Sbjct: 150 VGWNHYDTIKELEDKRKERAQVTYERRKQL-AKLRVKAERLPRR 192
>UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protein;
n=16; Alveolata|Rep: Ribosomal protein L13 containing
protein - Tetrahymena thermophila SB210
Length = 270
Score = 105 bits (252), Expect = 8e-22
Identities = 48/81 (59%), Positives = 60/81 (74%)
Frame = +3
Query: 12 NKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCN 191
+K +VID +GHLLGRLA+ +AK LL G ++VVVR E INISG+ FRN++K FL K N
Sbjct: 75 DKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMN 134
Query: 192 VNPARGPFHFRAPSKILWKTV 254
NP RG HFRAPS+I W+ V
Sbjct: 135 HNPRRGVQHFRAPSRIFWRAV 155
Score = 62.9 bits (146), Expect = 6e-09
Identities = 29/80 (36%), Positives = 42/80 (52%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
RGM+PHKT +G AL L+ ++G P P+D L+ R C +G LS
Sbjct: 156 RGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDALKVQRLRNSRPVCKLGDLSAS 215
Query: 434 IGWKYRDVVRKLEDKRXGXA 493
+GW + ++ KLE+KR A
Sbjct: 216 VGWGKQTLIEKLEEKRRARA 235
>UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB39CE UniRef100
entry - Canis familiaris
Length = 172
Score = 103 bits (246), Expect = 4e-21
Identities = 49/79 (62%), Positives = 62/79 (78%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 194
+ +V+ GRGHLLG LAA +AK +L G KVVVV E INISGNF+RNKLK ++FL K+ N
Sbjct: 5 QVLVLSGRGHLLGCLAATVAKQVL-GCKVVVVHYEGINISGNFYRNKLKYLAFLCKQMNT 63
Query: 195 NPARGPFHFRAPSKILWKT 251
NP+RGP+ F+APS+I W T
Sbjct: 64 NPSRGPYRFQAPSRIFWWT 82
Score = 45.2 bits (102), Expect(2) = 3e-04
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +2
Query: 386 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRXGXAVXRVAMKRNL 523
LKP R + ++GRL+H++GWKY+ V LE+ R A K+ L
Sbjct: 98 LKPTRKFAYLGRLAHKVGWKYQAVTATLEENRKEKAKIHYWKKKQL 143
Score = 21.8 bits (44), Expect(2) = 3e-04
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTY 316
RGM+PHKT L+ R +
Sbjct: 84 RGMLPHKTNLKVVRLKPTRKF 104
>UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative;
n=10; Trypanosomatidae|Rep: 60S ribosomal protein L13a,
putative - Leishmania major
Length = 222
Score = 100 bits (239), Expect = 3e-20
Identities = 46/80 (57%), Positives = 59/80 (73%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
IVID + H+LGR AAV+AK LL G K+ VVRCEQ+NI+G RNK+K + +LRKR NP
Sbjct: 25 IVIDLKDHVLGRAAAVVAKQLLLGKKITVVRCEQLNIAGTEIRNKIKYLQYLRKRKLTNP 84
Query: 201 ARGPFHFRAPSKILWKTVEA 260
+GPFH RAPS + +TV +
Sbjct: 85 TKGPFHHRAPSDVFVRTVRS 104
Score = 51.2 bits (117), Expect = 2e-05
Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPF-DNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 430
R M+P T+RG AL L Y+G PP C + R Y +G +
Sbjct: 103 RSMLPRYTKRGMKALNSLVAYEGIPPNVVRTGGRVVIPRAQRHVCYRSERPYTVLGNMCK 162
Query: 431 EIGWKYRDVVRKLEDKRXGXAVXRVAMKRNLR 526
+GWKY DVV LE R A + LR
Sbjct: 163 HVGWKYSDVVANLEKARVEKASRHHEKQAKLR 194
>UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1;
Guillardia theta|Rep: 60s ribosomal protein L13A -
Guillardia theta (Cryptomonas phi)
Length = 194
Score = 93.1 bits (221), Expect = 5e-18
Identities = 38/81 (46%), Positives = 60/81 (74%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 194
K V+D + HLLGR+A++ AK +L+G+K++++R E +I+G RN K S +K+ N
Sbjct: 2 KIHVLDAKNHLLGRMASICAKKILQGDKIIIIRSELTSITGKLGRNVNKYKSIFKKKTNT 61
Query: 195 NPARGPFHFRAPSKILWKTVE 257
NP RGPFHF++PSKIL++T++
Sbjct: 62 NPRRGPFHFKSPSKILYQTIK 82
Score = 47.6 bits (108), Expect = 2e-04
Identities = 25/86 (29%), Positives = 42/86 (48%)
Frame = +2
Query: 260 MIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIG 439
MIPHKT RG AL+ L+ ++G P F +K R ++G++ +G
Sbjct: 84 MIPHKTMRGSKALKNLKIFEGLPRIFSKIKKEKFFEAFRYKVIKNYRKTVNLGKVCEVLG 143
Query: 440 WKYRDVVRKLEDKRXGXAVXRVAMKR 517
WK R + + D+ A+ +V +K+
Sbjct: 144 WKNRKFIEQKSDQL--AALGKVVLKK 167
>UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit; n=2;
Ostreococcus|Rep: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit -
Ostreococcus lucimarinus CCE9901
Length = 199
Score = 93.1 bits (221), Expect = 5e-18
Identities = 40/81 (49%), Positives = 57/81 (70%)
Frame = +3
Query: 12 NKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCN 191
+K IVID +GHL GRLA++++K LL+G VVVVR E I +SG R ++ + KR N
Sbjct: 2 DKVIVIDAKGHLFGRLASIVSKQLLQGQHVVVVRTEGICMSGGMVRRRMAHDRYKNKRMN 61
Query: 192 VNPARGPFHFRAPSKILWKTV 254
NP +GP+H+ +PS++ WKTV
Sbjct: 62 TNPKKGPYHYTSPSRLFWKTV 82
Score = 64.9 bits (151), Expect = 1e-09
Identities = 31/88 (35%), Positives = 43/88 (48%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
RGM+PHKT RG A + Y+G P P+D L G +C +G +
Sbjct: 83 RGMLPHKTVRGAAAFERFKAYEGIPAPYDKVKRAVVPEALKVLRLGEGHRFCVLGDFCEQ 142
Query: 434 IGWKYRDVVRKLEDKRXGXAVXRVAMKR 517
IGWK+ +V++LE KR A A K+
Sbjct: 143 IGWKHGAIVKELEAKRQTAASEYWAQKK 170
>UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_608_8346_8939 - Giardia lamblia ATCC
50803
Length = 197
Score = 88.2 bits (209), Expect = 1e-16
Identities = 41/78 (52%), Positives = 57/78 (73%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
IVID +GH+LGRL+A++AK LL G++V +VRCE+ ISG F K + + KR N N
Sbjct: 4 IVIDCKGHILGRLSAIVAKELLHGHEVALVRCEKAIISGAFRDVKAHYLKKMHKRTNFNH 63
Query: 201 ARGPFHFRAPSKILWKTV 254
RGPFHFRAP++I+ +T+
Sbjct: 64 LRGPFHFRAPAEIVRRTI 81
Score = 72.9 bits (171), Expect = 5e-12
Identities = 33/76 (43%), Positives = 43/76 (56%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
RGMIP+KT RG +A+ LR YDG PP CL+P R C VGR++HE
Sbjct: 82 RGMIPYKTVRGSDAMSRLRVYDGIPPCCARYKRVVCPSAMAYLCLRPERRRCEVGRVAHE 141
Query: 434 IGWKYRDVVRKLEDKR 481
IGW++ V + E +R
Sbjct: 142 IGWQHAADVERYEKRR 157
>UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4;
Entamoeba|Rep: Ribosomal protein L13A - Entamoeba dispar
Length = 87
Score = 82.2 bits (194), Expect = 9e-15
Identities = 37/80 (46%), Positives = 54/80 (67%)
Frame = +3
Query: 9 SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRC 188
+NK VID GH+LGR+A+V+AK LL G K+V+VRCE + + G ++ + RKR
Sbjct: 8 NNKVTVIDCHGHVLGRVASVVAKHLLLGQKIVLVRCEDLQVCGTLKMRLVQWELYQRKRV 67
Query: 189 NVNPARGPFHFRAPSKILWK 248
N NP RG FH R+P++++ K
Sbjct: 68 NTNPTRGAFHHRSPAEMVRK 87
>UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7;
Trichomonas vaginalis G3|Rep: Ribosomal protein L13,
putative - Trichomonas vaginalis G3
Length = 200
Score = 82.2 bits (194), Expect = 9e-15
Identities = 41/78 (52%), Positives = 50/78 (64%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
IVID +GH+ GRLAA +AK LL+G KVVVVRCE+I ++G FL K N NP
Sbjct: 5 IVIDAKGHIQGRLAAAVAKQLLKGRKVVVVRCEEIELNGQHKFTVHTYERFLNKTTNSNP 64
Query: 201 ARGPFHFRAPSKILWKTV 254
GPFH RAP +I + V
Sbjct: 65 RDGPFHQRAPHEIFARAV 82
Score = 56.8 bits (131), Expect = 4e-07
Identities = 28/76 (36%), Positives = 41/76 (53%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
RGMIP+KT RG +A L+ Y+G P + + + R +GRLS
Sbjct: 83 RGMIPYKTHRGADAFANLQCYEGIPAKYVSYKRLVIPHALRCVSIHTDRPTTKLGRLSTT 142
Query: 434 IGWKYRDVVRKLEDKR 481
+GWKY +VV +LE++R
Sbjct: 143 MGWKYGNVVAQLEEQR 158
>UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13A
- Encephalitozoon cuniculi
Length = 198
Score = 75.4 bits (177), Expect = 1e-12
Identities = 37/78 (47%), Positives = 48/78 (61%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
++ID G + G+LAA +AK+LLEG +V VV E+ G+ R K +L KRC VNP
Sbjct: 7 VIIDATGQVAGKLAAKVAKLLLEGVRVTVVCAEEAVFVGSLERAMDKFKQYLNKRCLVNP 66
Query: 201 ARGPFHFRAPSKILWKTV 254
RGPFHFR P L K +
Sbjct: 67 RRGPFHFREPRMHLAKII 84
Score = 43.6 bits (98), Expect = 0.004
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
R MI +K RGK A+ L TY+G P + + P R Y +G+L
Sbjct: 85 RRMISYKKPRGKAAMSRLATYEGIPRELEGQPRYKVTCAFVKYTGNPNR-YVTLGKLLSM 143
Query: 434 IGWKYRDVVRKLEDK 478
GWK+ + + L D+
Sbjct: 144 FGWKHAEAAKSLTDE 158
>UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
ribosomal protein L13a - Oryza sativa subsp. japonica
(Rice)
Length = 172
Score = 72.5 bits (170), Expect = 7e-12
Identities = 31/70 (44%), Positives = 41/70 (58%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
RGMIPHKT+RG+ AL L+ Y+ PP+D L+PG YC +G+LS E
Sbjct: 64 RGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKE 123
Query: 434 IGWKYRDVVR 463
+GW Y D +R
Sbjct: 124 VGWNYYDTIR 133
Score = 51.6 bits (118), Expect = 1e-05
Identities = 31/78 (39%), Positives = 41/78 (52%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
+V+D R H+L RLA++IAK LL G +VV R N P
Sbjct: 12 VVVDARHHMLSRLASIIAKELLNGKRVV--------------------------RMNTKP 45
Query: 201 ARGPFHFRAPSKILWKTV 254
+ GP HFR+P+KILW+TV
Sbjct: 46 SHGPIHFRSPAKILWRTV 63
>UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;
n=1; Pisum sativum|Rep: Putative senescence-associated
protein - Pisum sativum (Garden pea)
Length = 255
Score = 69.7 bits (163), Expect = 5e-11
Identities = 38/91 (41%), Positives = 52/91 (57%)
Frame = +3
Query: 45 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFR 224
+LGRLA+++AK L + +VRCE+I ISG R K+K M FLR+R N P+ GP F
Sbjct: 1 MLGRLASIVAKELSMVRRSFLVRCEEICISGGLGRQKMKYMRFLRRRMNTKPSHGPITFV 60
Query: 225 APSKILWKTVEA*SHTKQSVARMLLGGYVHM 317
+ HT+ SVAR+ L G +M
Sbjct: 61 LHPRSFGALFVEWFHTRPSVARLHLLGCKYM 91
>UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2;
Neoptera|Rep: Ribomsomal protein L13Ae - Cicindela
campestris (Green tiger beetle)
Length = 78
Score = 66.5 bits (155), Expect = 5e-10
Identities = 26/48 (54%), Positives = 32/48 (66%)
Frame = +2
Query: 383 CLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRXGXAVXRVAMKRNLR 526
CLKPGR YCHVGRLSHE+GWKY+ V+ LE KR + R ++
Sbjct: 4 CLKPGRKYCHVGRLSHEVGWKYQKVIESLEHKRQVKVAIKARKHRKMK 51
Score = 44.4 bits (100), Expect = 0.002
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = +1
Query: 514 KKLKRITKDAGEKVSKATTPFTTIIQSYGYN 606
+K+KR+TK A +K+ K P+T +I+SYGYN
Sbjct: 48 RKMKRLTKKASKKIEKQVAPYTAVIKSYGYN 78
>UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L13
- Candidatus Nitrosopumilus maritimus SCM1
Length = 154
Score = 64.9 bits (151), Expect = 1e-09
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = +3
Query: 9 SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRC 188
+++ IV+D H+ GRL++ +AK+L +G++V +V CE+I SG + FL
Sbjct: 10 TDRPIVVDATNHIAGRLSSNVAKLLKQGHRVSIVNCEKIMYSGTRSNLIKEYREFLEINS 69
Query: 189 NVNPARGPFHFRAPSKILWKTV 254
+NP GP H+R P I+ K +
Sbjct: 70 IINPKHGPVHYRRPDTIITKMI 91
>UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L13 - Cenarchaeum
symbiosum
Length = 139
Score = 64.5 bits (150), Expect = 2e-09
Identities = 28/77 (36%), Positives = 47/77 (61%)
Frame = +3
Query: 24 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPA 203
++D H+ GRLA+ +AK+LLEGN+V ++ CE++ ISG + FL+ ++P
Sbjct: 1 MVDATDHIAGRLASNVAKMLLEGNRVSIINCEKVMISGKRASIVREYRDFLKIASIIHPE 60
Query: 204 RGPFHFRAPSKILWKTV 254
GP+H R P I+ + +
Sbjct: 61 HGPYHPRRPDTIMTRMI 77
>UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L13 - Thermofilum
pendens (strain Hrk 5)
Length = 154
Score = 61.3 bits (142), Expect = 2e-08
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLK-LMSFLRKRCN 191
+AIVIDG GH+ GRLA+V+AK LL+G++VVVV E+I I+G R K L ++ +
Sbjct: 6 EAIVIDGTGHIAGRLASVVAKRLLKGDRVVVVNAEKIVITGKPKRVVEKYLKRWVEWKTY 65
Query: 192 VNP-ARGPFHFRAPSKILWKTVEA*SHTKQSVAR 290
NP RGP + + P ++ + V ++++ R
Sbjct: 66 YNPELRGPKYPKTPDRLFKRMVRGMLPMEKTIGR 99
>UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L13A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 181
Score = 60.9 bits (141), Expect = 2e-08
Identities = 30/81 (37%), Positives = 47/81 (58%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 194
K IVIDGR L+GRLA+ I +L +G + V+RC+ + SG + +++ +
Sbjct: 3 KTIVIDGRNQLIGRLASNIVILLKKGYTLKVIRCKDLVFSGRYEHVYNRILKKKNLKTRT 62
Query: 195 NPARGPFHFRAPSKILWKTVE 257
NP +GP+ F PS +L K V+
Sbjct: 63 NPNKGPYFFSNPSSLLKKIVK 83
>UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45;
root|Rep: 50S ribosomal protein L13P - Pyrococcus
horikoshii
Length = 142
Score = 55.2 bits (127), Expect = 1e-06
Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Frame = +3
Query: 24 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN--FFRNKLKLMSFLRKRCNVN 197
+I+ G +LGRLA+ +AK+LLEG +VV+V E+ I+GN +K K + LR N
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTL--TN 60
Query: 198 PARGPFHFRAPSKILWKTV 254
P RGPF+ + +I+ +T+
Sbjct: 61 PRRGPFYPKRSDEIVRRTI 79
Score = 39.1 bits (87), Expect = 0.082
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
RGM+P KT+RG+ A R L+ Y G P F + +P Y VG ++
Sbjct: 80 RGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHVSRLSRP--KYVTVGEVAKF 137
Query: 434 IGWKY 448
+G K+
Sbjct: 138 LGGKF 142
>UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L13P -
Archaeoglobus fulgidus
Length = 156
Score = 52.4 bits (120), Expect = 8e-06
Identities = 32/89 (35%), Positives = 48/89 (53%)
Frame = +3
Query: 24 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPA 203
VID GH+LGRL++ IAK LL G ++VVV E+ I+G+ + + + K +
Sbjct: 18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGDKY---MVFERYKEKYDRGSKE 74
Query: 204 RGPFHFRAPSKILWKTVEA*SHTKQSVAR 290
+GP+ R P +I +TV K S R
Sbjct: 75 KGPYFPRHPERIFKRTVRGMLPWKSSRGR 103
Score = 32.7 bits (71), Expect = 7.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCP 328
RGM+P K+ RG++A R LR + G P
Sbjct: 92 RGMLPWKSSRGRDAYRRLRVFMGVP 116
>UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1;
Methanopyrus kandleri|Rep: 50S ribosomal protein L13P -
Methanopyrus kandleri
Length = 159
Score = 52.0 bits (119), Expect = 1e-05
Identities = 29/77 (37%), Positives = 47/77 (61%)
Frame = +3
Query: 24 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPA 203
VID +LGRLA+V+AK +L+G ++ V+ E+ I+G +N +K +L+K +P
Sbjct: 17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITGK--KNTIK-EEWLQKIQRGDPK 73
Query: 204 RGPFHFRAPSKILWKTV 254
+GPF+ R P I + V
Sbjct: 74 KGPFYPRRPDLIFRRVV 90
Score = 36.3 bits (80), Expect = 0.58
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
RGM+P KT+RG+ A + LR Y G P + Y +G LS E
Sbjct: 91 RGMLPWKTKRGREAFKRLRAYIGTPRWVEEANIEPERVAEADMSRLGHLWYVTLGELSEE 150
Query: 434 IGWK 445
+G++
Sbjct: 151 LGYQ 154
>UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropyrum
pernix|Rep: 50S ribosomal protein L13P - Aeropyrum
pernix
Length = 155
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/46 (50%), Positives = 34/46 (73%)
Frame = +3
Query: 3 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN 140
G + IV+DG G ++GRLA+V+AK+LL G +V VV E+I +SG+
Sbjct: 5 GGEAREIVVDGSGMIMGRLASVVAKLLLAGWRVNVVNAEKIVLSGD 50
Score = 35.9 bits (79), Expect = 0.77
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
RGM+P RG+ AL LR Y G P D + +Y +G ++ +
Sbjct: 90 RGMLPKNKARGRRALARLRVYVGVP---DELKGREFVRFPEADASRLSSHYIELGAVARQ 146
Query: 434 IGWK 445
+GWK
Sbjct: 147 LGWK 150
>UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L13P -
Pyrobaculum aerophilum
Length = 187
Score = 46.8 bits (106), Expect = 4e-04
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLE--GNKVVVVRCEQINISGNFFRNKLKLMSFLRK---- 182
+++D GH+ GRLA IAK LLE ++VVV E++ I+G+ K+ + F RK
Sbjct: 19 VIVDAEGHVAGRLATYIAKALLERPNLRIVVVNAEKLVITGD---EKMVIEWFKRKISEW 75
Query: 183 RCNVNPAR-GPFHFRAPSKILWKTVEA*SHTKQSVARMLL 299
R + NP + GP R P ++ + V K R L
Sbjct: 76 RTHYNPEKAGPKVPRRPDRVFKRIVRGMLPKKSETGRSAL 115
Score = 32.7 bits (71), Expect = 7.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCP 328
RGM+P K+E G++AL+ LR Y P
Sbjct: 101 RGMLPKKSETGRSALKRLRVYMSIP 125
>UniRef50_Q53K43 Cluster: Retrotransposon protein, putative,
unclassified; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Retrotransposon protein, putative,
unclassified - Oryza sativa subsp. japonica (Rice)
Length = 512
Score = 45.2 bits (102), Expect = 0.001
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +2
Query: 281 RGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
RG+ AL L+ Y+G PPP+D L+PG YC +G+LS E
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKE 59
>UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11;
Euryarchaeota|Rep: 50S ribosomal protein L13P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 140
Score = 44.8 bits (101), Expect = 0.002
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +3
Query: 24 VIDGRGHLLGRLAAVIAKVLLEGN-KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
VID +G +LGRLA+ +AK LL G+ KV ++ E+ ISG+ L + R
Sbjct: 3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGS---RAATLREYRETRDRGAT 59
Query: 201 ARGPFHFRAPSKILWKTV 254
GP+ + P +IL +T+
Sbjct: 60 EFGPYFPKRPDRILKRTI 77
Score = 34.7 bits (76), Expect = 1.8
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
RGM+P+K RG++A+ L+ Y G P++ L Y +G +S +
Sbjct: 78 RGMLPYKRARGRDAMSRLKVYVGV--PYELKGAETTTIADADMRLLSSNKYVELGEVSQK 135
Query: 434 IGWKY 448
+G K+
Sbjct: 136 MGSKF 140
>UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3;
Sulfolobaceae|Rep: 50S ribosomal protein L13P -
Sulfolobus solfataricus
Length = 149
Score = 44.0 bits (99), Expect = 0.003
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 194
+ ++I+ G +LGR+A+ + ++L EG KV++V E+ ISG R L +
Sbjct: 8 QVVIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVKTLF 67
Query: 195 NPAR-GPFHFRAPSKILWKTVEA*SHTKQSVARML 296
NP R G R+P I+ +T+ RML
Sbjct: 68 NPYRNGIRRPRSPINIVKRTIRGMLPKSSKGRRML 102
>UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L13P -
Picrophilus torridus
Length = 138
Score = 43.2 bits (97), Expect = 0.005
Identities = 22/78 (28%), Positives = 42/78 (53%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
I ID H+ GRL++ +AK LL G + +V ++ I+G R + + F R +
Sbjct: 2 IYIDASNHIYGRLSSYVAKKLLNGESITIVNASKVVITG---RKEFIIDKFNNLRNTGSI 58
Query: 201 ARGPFHFRAPSKILWKTV 254
+GP++ + +IL +++
Sbjct: 59 RKGPYYPKTADRILKRSI 76
>UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured
organism HF70_19B12|Rep: Ribosomal protein L13P -
uncultured organism HF70_19B12
Length = 161
Score = 42.3 bits (95), Expect = 0.009
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 14/119 (11%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLL----EGN--KVVVVRCEQINISGNFFRNKLKLMSFLRK 182
+V D +LGRLA+ IAK LL EG+ +V+++ E ++G ++++ L + RK
Sbjct: 7 LVFDAHDKVLGRLASHIAKTLLVTRREGDPKRVIIINAEMAIVTGP--KDRI-LADYDRK 63
Query: 183 RCNVNPARGPFHFRAPSKILWKTV------EA*SHTKQSV--ARMLLGGYVHMMGALLP 335
+P +GPF R P IL +TV + S +Q+V R+++G ++ G LP
Sbjct: 64 YKLNHPRKGPFFPRMPDMILKRTVRGMLPYQKKSSGRQAVKDLRVMIGTPTNLKGEALP 122
>UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L13 -
Halorubrum lacusprofundi ATCC 49239
Length = 149
Score = 42.3 bits (95), Expect = 0.009
Identities = 22/78 (28%), Positives = 42/78 (53%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
+V+D R +LGR+++ +A+ +L+G V VV E+ I+G N+ M R +
Sbjct: 10 VVVDARDCILGRVSSKVAQRVLDGETVAVVNAERAVITG----NEEATMETYHTRAELGS 65
Query: 201 ARGPFHFRAPSKILWKTV 254
GP++ + P +I + +
Sbjct: 66 DSGPYYPKRPDRIFKRAI 83
Score = 33.9 bits (74), Expect = 3.1
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCP 328
RGM+P+KTE G+ AL +R Y G P
Sbjct: 84 RGMLPYKTEDGREALSNVRVYVGNP 108
>UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6;
Methanococcales|Rep: 50S ribosomal protein L13P -
Methanococcus maripaludis
Length = 137
Score = 41.1 bits (92), Expect = 0.020
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
+V++ ++GRLA+ +AK+ L G ++ VV E+ ++GN K + ++ NP
Sbjct: 2 VVVNAENAVVGRLASYVAKLALSGEEITVVNAEKAIMTGNKEYIFQKYVQLRTRKSISNP 61
Query: 201 AR-GPFHFRAPSKILWKTV 254
+ GP + R P I+ + +
Sbjct: 62 KKMGPKYPRRPDDIVRRVI 80
>UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4;
Halobacteriaceae|Rep: 50S ribosomal protein L13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 145
Score = 40.7 bits (91), Expect = 0.027
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
+++D R ++GR+A+ +A+ L+G V VV E+ I+G + +++ KR ++
Sbjct: 10 VIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITG----REEQIVEKYEKRVDIGN 65
Query: 201 ARGPFHFRAPSKILWKTVEA-*SHTKQ 278
G F+ + P I +T+ H KQ
Sbjct: 66 DNGYFYPKRPDGIFKRTIRGMLPHKKQ 92
Score = 33.9 bits (74), Expect = 3.1
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCP 328
RGM+PHK +RG+ A +R Y G P
Sbjct: 84 RGMLPHKKQRGREAFESVRVYLGNP 108
>UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4;
Thermoprotei|Rep: 50S ribosomal protein L13P -
Sulfolobus acidocaldarius
Length = 148
Score = 38.3 bits (85), Expect = 0.14
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISG 137
+++D +LGR++ IAK+L G KV VV E+ ISG
Sbjct: 8 VIVDATNQILGRMSTHIAKLLKSGKKVYVVNAEKAIISG 46
>UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1;
Cyanidioschyzon merolae|Rep: 50S ribosomal protein L13 -
Cyanidioschyzon merolae (Red alga)
Length = 98
Score = 35.1 bits (77), Expect = 1.3
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNK--VVVVRCEQINISGNFFRNK 155
++I+ + +LGRLA+ + K LL + + +V+ QI ++GN ++NK
Sbjct: 1 MLINAKDEILGRLASRVVKTLLTQSVTCIEIVQANQIQVTGNKYKNK 47
>UniRef50_Q4QG46 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1445
Score = 34.7 bits (76), Expect = 1.8
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = -3
Query: 152 VPKEVARDIDLFAANHNN-----FVPFEKDLGDDCRQTAQQMTTAIDHYGLI 12
VP ++ R+ HNN FVPF ++ +D QT QQ+ +A+ H GL+
Sbjct: 271 VPADMNRNATSNMKGHNNGDPGDFVPFAREEKEDPIQTTQQLYSAVCHAGLV 322
>UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 106
Score = 34.3 bits (75), Expect = 2.3
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = -1
Query: 259 ASTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEILICSQRTTTTLFPSRR 80
+S FHR L+W+ R+G + + + +S S F+KK+P + SQ T+ P RR
Sbjct: 16 SSGCFHR-----LEWRACRSGESPYKFQSLSVSRSKFIKKVPSGRVISQSTSAFWLPFRR 70
>UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1;
Arabidopsis thaliana|Rep: 60S L13 ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 61
Score = 34.3 bits (75), Expect = 2.3
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 425 SHEIGWKYRDVVRKLEDKR 481
+HE+GW+Y+ +V KLE+KR
Sbjct: 1 AHEVGWQYQGIVEKLEEKR 19
>UniRef50_A5BYS2 Cluster: Putative uncharacterized protein; n=3;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 258
Score = 33.9 bits (74), Expect = 3.1
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 398 RNYCHVGRLSHEIGWKYRDVVRKLEDKRXGXAVXRVAMKR--NLRGSPRMLVRRC 556
R CH ++S +G+KYR+ +R + + A R KR L S R++ RC
Sbjct: 7 RAXCHSIKISPSVGYKYREALRTISQVKTWSAKFRRCTKRAAKLLRSKRLVPHRC 61
>UniRef50_A5IKR4 Cluster: Putative uncharacterized protein
precursor; n=1; Thermotoga petrophila RKU-1|Rep:
Putative uncharacterized protein precursor - Thermotoga
petrophila RKU-1
Length = 86
Score = 32.7 bits (71), Expect = 7.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 333 GGGHPSYVRSXLRAFLPRSVLCGIMPLQSSIE 238
GGG S+V + FLPR + +MP+ +S+E
Sbjct: 2 GGGKVSFVSFGRKVFLPRERVIAVMPISTSVE 33
>UniRef50_Q54I73 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1471
Score = 32.3 bits (70), Expect = 9.4
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 48 LGRLAAVIAKVLLEGNKVVVVRCE-QINISGNFFRNKLKLMSFLRKRCNVN 197
L LA +I VL+E N R E +I +S F N+ K +S RKR N N
Sbjct: 991 LDSLALIIGSVLIEAN--TCERSEFEIKVSSKAFENQFKYISEQRKRINDN 1039
>UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L13P -
Nanoarchaeum equitans
Length = 162
Score = 32.3 bits (70), Expect = 9.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCP 328
RGM+P KT RG+ L+ ++ Y G P
Sbjct: 82 RGMLPRKTARGRELLKNVKVYIGVP 106
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,725,026
Number of Sequences: 1657284
Number of extensions: 12025069
Number of successful extensions: 29809
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 28974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29793
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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