Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30417
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   123   2e-29
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   123   2e-29
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   120   1e-28
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    29   0.71 
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    26   3.8  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   6.6  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   6.6  
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    25   6.6  

>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  123 bits (297), Expect = 2e-29
 Identities = 55/80 (68%), Positives = 67/80 (83%)
 Frame = +3

Query: 15  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 194
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 195 NPARGPFHFRAPSKILWKTV 254
           NP+RG FHFRAPS+I  K V
Sbjct: 66  NPSRGAFHFRAPSRIFQKAV 85



 Score = 93.5 bits (222), Expect = 2e-20
 Identities = 41/76 (53%), Positives = 49/76 (64%)
 Frame = +2

Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
           RGM+PHKT RG+ AL  L+  +G PPPFD               LKPGR YC VGRLS E
Sbjct: 86  RGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSE 145

Query: 434 IGWKYRDVVRKLEDKR 481
           +GWKY D+V KLE++R
Sbjct: 146 VGWKYSDIVSKLEERR 161


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  123 bits (297), Expect = 2e-29
 Identities = 55/80 (68%), Positives = 67/80 (83%)
 Frame = +3

Query: 15  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 194
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 195 NPARGPFHFRAPSKILWKTV 254
           NP+RG FHFRAPS+I  K V
Sbjct: 66  NPSRGAFHFRAPSRIFQKAV 85



 Score = 93.9 bits (223), Expect = 2e-20
 Identities = 41/76 (53%), Positives = 49/76 (64%)
 Frame = +2

Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
           RGM+PHKT RG+ AL  L+  +G PPPFD               LKPGR YC VGRLS E
Sbjct: 86  RGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSE 145

Query: 434 IGWKYRDVVRKLEDKR 481
           +GWKY D+V KLE++R
Sbjct: 146 VGWKYNDIVAKLEERR 161


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  120 bits (290), Expect = 1e-28
 Identities = 52/80 (65%), Positives = 66/80 (82%)
 Frame = +3

Query: 15  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 194
           K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 195 NPARGPFHFRAPSKILWKTV 254
           NP+RG FHFRAPS+I  K V
Sbjct: 66  NPSRGAFHFRAPSRIFTKAV 85



 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 38/76 (50%), Positives = 49/76 (64%)
 Frame = +2

Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
           RGM+PHKT RG  AL+ L+  +G PPPFD               LKP R YC +GRLS E
Sbjct: 86  RGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSE 145

Query: 434 IGWKYRDVVRKLEDKR 481
           +GWKY+++V KLE++R
Sbjct: 146 VGWKYKNIVSKLEERR 161


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 42  HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 146
           H L  + AV  K++  G K VV+RC+ I  + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -3

Query: 533 VILLSFFSWQLS*QPCXSSCLQAYEQH---HGISIQFHGTVCL 414
           +++L  FS+ L   PC +S  QA  +    H +S  +H  + L
Sbjct: 289 IVVLVLFSYPLQCHPCRNSVYQAIRRSYSAHDMSDGYHAVITL 331


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 327 GHPSYVRSXLRAFLPRSVLCGIMP 256
           G+ SY+ + L+AFLP++V   + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 226 ALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEILICSQRTTTTLFPSRRTLAMTA 62
           AL+  G      ++L+R+ND +    +KK+ + LI  ++  T     R  L  T+
Sbjct: 304 ALRLIGKGTFGQVYLVRKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTS 358


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 419 RLSHEIGWKYRDVVRKLEDKRXGXAVXRVAMKRNL 523
           R SHE  +K++D ++K+ D      + R  +++NL
Sbjct: 27  RRSHEQTYKHQDAIKKVMDDIHRSNLLRQELEKNL 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,972
Number of Sequences: 5004
Number of extensions: 49119
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)