Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30417
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0071 - 522920-523063,524125-524212,524289-524677 110 1e-24
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 109 2e-24
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 73 2e-13
11_04_0056 + 12942802-12942920,12943022-12943115 56 2e-08
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 31 0.73
07_03_0257 + 15881279-15881339,15881649-15881675,15881860-15881957 30 1.3
04_03_0232 - 13049649-13052807 28 6.8
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 6.8
04_03_0148 + 11869929-11869968,11870000-11870421 27 8.9
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 110 bits (264), Expect = 1e-24
Identities = 47/84 (55%), Positives = 62/84 (73%)
Frame = +3
Query: 3 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 182
G + +V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG R K+K + FLRK
Sbjct: 6 GLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRK 65
Query: 183 RCNVNPARGPFHFRAPSKILWKTV 254
R N P+ GP HFRAPS+I W+TV
Sbjct: 66 RMNTKPSHGPIHFRAPSRIFWRTV 89
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/88 (46%), Positives = 54/88 (61%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
RGMIPHKT RG+ AL L+ +DG PPP+D L+PG YC +G+LS E
Sbjct: 90 RGMIPHKTPRGEAALANLKAFDGVPPPYDRTKRMVVPDALKVLRLQPGHKYCLLGQLSKE 149
Query: 434 IGWKYRDVVRKLEDKRXGXAVXRVAMKR 517
+GW Y D +R+LE+KR A +VA +R
Sbjct: 150 VGWNYHDTIRELEEKRKEKA--KVAYER 175
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 109 bits (262), Expect = 2e-24
Identities = 47/78 (60%), Positives = 61/78 (78%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
+V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG R K+K + FLRKR N P
Sbjct: 12 VVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 71
Query: 201 ARGPFHFRAPSKILWKTV 254
+ GP HFR+P+KILW+TV
Sbjct: 72 SHGPIHFRSPAKILWRTV 89
Score = 88.2 bits (209), Expect = 5e-18
Identities = 37/76 (48%), Positives = 49/76 (64%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
RGMIPHKT+RG+ AL L+ Y+G PPP+D L+PG YC +G+LS E
Sbjct: 90 RGMIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKE 149
Query: 434 IGWKYRDVVRKLEDKR 481
+GW Y D +R+LE+KR
Sbjct: 150 VGWNYYDTIRELEEKR 165
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 72.5 bits (170), Expect = 2e-13
Identities = 31/70 (44%), Positives = 41/70 (58%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
RGMIPHKT+RG+ AL L+ Y+ PP+D L+PG YC +G+LS E
Sbjct: 24 RGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKE 83
Query: 434 IGWKYRDVVR 463
+GW Y D +R
Sbjct: 84 VGWNYYDTIR 93
Score = 40.3 bits (90), Expect = 0.001
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 189 NVNPARGPFHFRAPSKILWKTV 254
N P+ GP HFR+P+KILW+TV
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTV 23
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 56.0 bits (129), Expect = 2e-08
Identities = 23/56 (41%), Positives = 31/56 (55%)
Frame = +2
Query: 281 RGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKY 448
RG+ AL L+ Y+G PPP+D L+PG YC +G+LS E+GW Y
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>02_05_0024 +
25152090-25153151,25153232-25154145,25154499-25154709,
25154757-25154921
Length = 783
Score = 31.1 bits (67), Expect = 0.73
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +1
Query: 64 QSSPRSFSKGTKLLWFAANKSISLATSLGTNSSLCHSCVRGAT*ILLVDLSILELHLRFY 243
Q+SP + +L WF N ++S LG C + T +DLS L + Y
Sbjct: 567 QNSPTDNTSSERLQWFRENSTVS---ELGLEPGQCKVFIESDTVGRNLDLSSLASFEQLY 623
Query: 244 GRL 252
GRL
Sbjct: 624 GRL 626
>07_03_0257 + 15881279-15881339,15881649-15881675,15881860-15881957
Length = 61
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 490 GCXESCHEKKLKRITKDAGEKVSKATTPFTTIIQS 594
G ESC++K + ITKD G+ P T+ +S
Sbjct: 14 GIPESCNDKMVNNITKDVGDFYDLFEGPMVTVSRS 48
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 491 PCXSSCLQAYEQHHGISIQFHGTVCLH 411
PC S+CL+ Y H IS+Q LH
Sbjct: 763 PCPSNCLKPYSAHCYISVQDEMQTNLH 789
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 60 AAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMS 170
A A ++ + VVVV CE+ I+G N +KL+S
Sbjct: 2515 AIAFAASAIQNSSVVVVTCEREVITGGHADNSVKLIS 2551
>04_03_0148 + 11869929-11869968,11870000-11870421
Length = 153
Score = 27.5 bits (58), Expect = 8.9
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 28 SMAVVICWAVWRQSSPRSF 84
S+ ++ICW VW++ + R F
Sbjct: 99 SLVLLICWMVWKERNARVF 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,563,499
Number of Sequences: 37544
Number of extensions: 353894
Number of successful extensions: 901
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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