Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30417
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   137   7e-33
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   137   7e-33
AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    29   2.0  
U41552-8|AAC69099.2|  771|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   3.5  
U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical p...    28   6.1  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  137 bits (331), Expect = 7e-33
 Identities = 60/84 (71%), Positives = 74/84 (88%)
 Frame = +3

Query: 3   GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 182
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 183 RCNVNPARGPFHFRAPSKILWKTV 254
           RCN+NPARG FH+RAP KI W+TV
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTV 85



 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 38/76 (50%), Positives = 48/76 (63%)
 Frame = +2

Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
           RGM+PHKT RG  AL+ LR Y+G P  +              F L+P R +C VGRLSHE
Sbjct: 86  RGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHE 144

Query: 434 IGWKYRDVVRKLEDKR 481
           +GW+++DVV KLE KR
Sbjct: 145 VGWQFQDVVAKLEAKR 160


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  137 bits (331), Expect = 7e-33
 Identities = 60/84 (71%), Positives = 74/84 (88%)
 Frame = +3

Query: 3   GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 182
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 183 RCNVNPARGPFHFRAPSKILWKTV 254
           RCN+NPARG FH+RAP KI W+TV
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTV 85



 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 38/76 (50%), Positives = 48/76 (63%)
 Frame = +2

Query: 254 RGMIPHKTERGKNALRXLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 433
           RGM+PHKT RG  AL+ LR Y+G P  +              F L+P R +C VGRLSHE
Sbjct: 86  RGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHE 144

Query: 434 IGWKYRDVVRKLEDKR 481
           +GW+++DVV KLE KR
Sbjct: 145 VGWQFQDVVAKLEAKR 160


>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 488 CXSSCLQAYEQHHGISIQFHGTVCLHDSNY 399
           C S  L  +E HHGI +   G + L D++Y
Sbjct: 329 CSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358


>U41552-8|AAC69099.2|  771|Caenorhabditis elegans Hypothetical
           protein K07E3.2 protein.
          Length = 771

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 527 LLSFFSWQLS*QPCXSSCLQAYEQHHGISIQFHGTVCL 414
           L+ FF+  LS   C  S ++ Y+++   +   HG +CL
Sbjct: 401 LIQFFAISLSFAGCFRSIIELYDKYKSTTKSRHGWLCL 438


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/47 (31%), Positives = 17/47 (36%)
 Frame = -3

Query: 455 HHGISIQFHGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHH 315
           HH      H     H   +G V  R H E     H   +  E GTHH
Sbjct: 381 HHEHKEGEHHEHAAHHDEHG-VHHRHHGEHHGTHHSPAHHGEHGTHH 426


>U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical
           protein C50E3.2 protein.
          Length = 168

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -1

Query: 520 VSFHGNSXNSXAXPLVFKLTNNITVFPSNFMGQSAYMTVITARFQTE 380
           + F+  S  +    L   L NNI VFPSN + +++ MT+   R +T+
Sbjct: 9   ICFYSISCLTDLDILNVALENNILVFPSN-ISEASGMTLFHGRIETK 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,383,645
Number of Sequences: 27780
Number of extensions: 289782
Number of successful extensions: 678
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)