Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30416
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L12018-5|AAU87822.1|  557|Caenorhabditis elegans Twik family of ...    30   1.8  
AL023858-1|CAA19568.2|  328|Caenorhabditis elegans Hypothetical ...    28   5.4  

>L12018-5|AAU87822.1|  557|Caenorhabditis elegans Twik family of
           potassium channelsprotein 7 protein.
          Length = 557

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 126 RNLHIFLNQINDKYSQNLLVGK*VASFNNKYINYYYKRVVNCCKCTFVVE 275
           R +H F  +I D  S   +VG  V   +  Y N   KR  N  +  F+VE
Sbjct: 451 RKIHYFGRKIQDARSALAVVGGKVVLVSELYANLMQKRARNMSREAFIVE 500


>AL023858-1|CAA19568.2|  328|Caenorhabditis elegans Hypothetical
           protein ZK285.1 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 547 YSYSKSVFALTFXYFYIECXIIVMHKXINGRK 642
           Y +S S+FA  F Y Y     I   K I+G+K
Sbjct: 96  YGFSMSIFACHFIYRYGNVNTIFKQKYISGKK 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,386,311
Number of Sequences: 27780
Number of extensions: 220892
Number of successful extensions: 386
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)