Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30416
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11130.1 68418.m01300 exostosin family protein contains Pfam ...    27   8.8  
At5g03800.1 68418.m00347 exostosin family protein / pentatricope...    27   8.8  

>At5g11130.1 68418.m01300 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 336

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 351 FNVCVRVIKCFSYISFFSLAKNKRTFNVKFDIEKIPSL 464
           ++ CV VI    Y+  FS   N +TF+V   I K+P +
Sbjct: 241 YSGCVPVIIADYYVLPFSDVLNWKTFSVHIPISKMPDI 278


>At5g03800.1 68418.m00347 exostosin family protein / pentatricopeptide
            (PPR) repeat-containing protein contains Pfam profiles:
            PF03016 exostosin family, PF01535 PPR repeat
          Length = 1388

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 351  FNVCVRVIKCFSYISFFSLAKNKRTFNVKFDIEKIPSL 464
            ++ CV V+    Y+  FS   N R+F+V   +E IP+L
Sbjct: 1294 YSGCVPVLINSGYVPPFSDVLNWRSFSVIVSVEDIPNL 1331


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,971,784
Number of Sequences: 28952
Number of extensions: 181094
Number of successful extensions: 241
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)