Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30415
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   5.8  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    26   5.8  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    25   7.7  

>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 202 NQESIESTVPLI*NYITHRHLSARIADSENILQV 101
           N+E +   VP I + + H+    R+  SEN L V
Sbjct: 23  NEEDLPFQVPQIADILVHQKCIERLGTSENALSV 56


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 395 FL*SFRGKLKDALEIRRIL--TPTSFLMRIVNIRFTPRK 505
           FL  F   LK  +++  ++  TPTSFL  + +I F  +K
Sbjct: 331 FLKRFVEYLKTRMKVLHVIAETPTSFLQHVKDITFIDKK 369


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 480 TIRIRKLVGVN-ILRISKASFSLPLKDYKNKKRTPVF 373
           T++   + G+N IL     SFS P+ D  N  + PVF
Sbjct: 408 TLKHLSVTGINSILCTELRSFSRPIPDGINPSQVPVF 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,080
Number of Sequences: 5004
Number of extensions: 49522
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)