Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30415
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0694 - 5719188-5720400,5720439-5721194,5722004-5722247,572...    29   4.5  
05_01_0103 + 686770-687017,687120-687270                               28   7.9  

>11_01_0694 -
           5719188-5720400,5720439-5721194,5722004-5722247,
           5723862-5723901
          Length = 750

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 564 NLPLLNHTLLPEFL-LPPISTLRGVNRILTIRIRKLVGVNILRI 436
           NLPLL H +L EFL L  +  ++      +I++ +   +N L +
Sbjct: 263 NLPLLEHAILDEFLELSRLENVKSTQEARSIKLIEKESINSLNL 306


>05_01_0103 + 686770-687017,687120-687270
          Length = 132

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = -1

Query: 459 VGVNILRISKASFSLPLKDYKNKKRTPVFTLLYL*THSNQQIQKIYIISWSVYWLSTKTK 280
           VG  +L     + SLP     N+ R  +F   ++ T  N Q  KI+ I+WS      ++K
Sbjct: 39  VGEPVLNYDDFAASLPA----NECRYAIFDYDFV-TEENCQKSKIFFIAWSPDTSRVRSK 93

Query: 279 ITFMTHHKKLKR 244
           + + +   + KR
Sbjct: 94  MIYASSKDRFKR 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,271,253
Number of Sequences: 37544
Number of extensions: 245372
Number of successful extensions: 367
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)