Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30413
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    26   2.1  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   2.1  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   2.1  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    25   3.6  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   3.6  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    25   4.8  
SPAC3A12.13c |||translation initiation factor eIF3 complex subun...    25   4.8  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    24   8.4  

>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 263 KGEKXXXKKR--KXARDDEHKKETYHNDEYSARDETESRRTKDKRS 394
           K +K   K++  K ++ DEHK + +           ESR  +D+ S
Sbjct: 100 KAKKKNSKEKISKSSKQDEHKTDVHKESVSKLSKNLESRNNRDENS 145


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 269 EKXXXKKRKXARDDEHKKETYHNDEYSARDETES 370
           +K    +R    D  + +E  HND Y  RD+ +S
Sbjct: 196 DKREHSRRSYRNDRNNWRERTHNDRYRHRDKYDS 229



 Score = 25.0 bits (52), Expect = 4.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 311 EHKKETYHNDEYSARDETESRRTKDKRSRNAG 406
           EH + +Y ND  + R+ T + R + +   ++G
Sbjct: 199 EHSRRSYRNDRNNWRERTHNDRYRHRDKYDSG 230


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 129 QNLYDCSHHDSCHHPFDSSCHPFL 58
           Q+ +  SHH   H+P   SC P L
Sbjct: 130 QSPFPHSHHPPLHNPLPVSCQPVL 153


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 305 DDEHKKETYHNDEYSARDETESRRTKDK 388
           D+ ++    H D YS+ DE E RR+ ++
Sbjct: 209 DNYNENRRRHYDSYSSYDELERRRSSNE 236


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 371 WTRSRLELNIHHCDMFPFCVRRPGRSFVSXP 279
           W RS   + + + DM     R+P RSF + P
Sbjct: 260 WNRSNFRIYLLNEDMIYMVGRKPKRSFFALP 290


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
 Frame = +2

Query: 284 KKRKXARDDEHKKETYHNDEYSAR------DETESRRTKDKRSR 397
           ++ +   DD    E+Y + +Y AR      +ET  RR + K  R
Sbjct: 163 EREEEVEDDNRSVESYSSSDYQARSRRRFSEETTQRRAEIKEKR 206


>SPAC3A12.13c |||translation initiation factor eIF3 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 305 DDEHKKETYHNDEYSARDETESRRTKDKRS 394
           D+E  KE+  ND +S   ++ S    D+ S
Sbjct: 43  DEEENKESLQNDSHSVSQKSSSSSQNDQGS 72


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 311 RRPGRSFVSXPXLFHLFYCFRVTS 240
           RRP   F S   +F   YCF++TS
Sbjct: 398 RRPIIVFGSLSIIFIHIYCFKITS 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,019,638
Number of Sequences: 5004
Number of extensions: 16898
Number of successful extensions: 64
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)