Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30413
(419 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 31 0.28
01_05_0593 + 23494515-23494706,23495819-23495936,23496302-234963... 30 0.66
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217... 29 2.0
10_08_0211 + 15899017-15901392 28 2.7
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 28 3.5
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384... 28 3.5
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 27 4.6
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 27 4.6
09_02_0414 - 8825575-8826654,8826737-8827144 27 6.1
07_03_1685 + 28645284-28645454,28645681-28647069 27 6.1
07_01_0463 + 3502708-3503535 27 6.1
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 27 8.1
05_01_0423 + 3322335-3322385,3322618-3323532,3323636-3323878 27 8.1
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 31.5 bits (68), Expect = 0.28
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 314 HKKETYHNDEYSARDETESRRTKDKR 391
HK E Y++D S+R SRR+++KR
Sbjct: 501 HKDEQYYSDSSSSRSNRHSRRSREKR 526
>01_05_0593 +
23494515-23494706,23495819-23495936,23496302-23496384,
23496468-23496524,23497004-23497112,23497230-23497282,
23497644-23497724,23497815-23497931
Length = 269
Score = 30.3 bits (65), Expect = 0.66
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +3
Query: 219 NSEEDSRRRDSETIEKVKKXXXRNERXPGTTNTKRKHITMMNIQLETRPSPGELRTREVG 398
N +ED R D+E + N+R P TT K +L++RP LR ++VG
Sbjct: 9 NRQEDYRSTDTEAGAAARSEGY-NKRRPETTTEKSGRRGTAGAELQSRPRIHLLRRQQVG 67
>01_05_0174 +
18919759-18920265,18920381-18920443,18921060-18921761,
18922934-18923068,18923391-18923474,18924095-18924151,
18924290-18924376,18924963-18925205
Length = 625
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 269 EKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRSR 397
E+ + + D++ +E N+E R+ET++RR + +R R
Sbjct: 62 EEDDLELEEEEEDEKDLEEMRRNEEEERREETQTRRRRRRRGR 104
>10_08_0211 + 15899017-15901392
Length = 791
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 87 PFDSSCHPFLYLFYLLGLARDLHLV 13
P +SCHP L + + + L +DLH +
Sbjct: 321 PIFASCHPVLTIAFTVWLGKDLHKI 345
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 186 LLCRHLFDXSYLXLSHCLYQNLYDCSHHDSCHHPFDS 76
+L H +D S +++CL C D+ H FDS
Sbjct: 657 VLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDS 693
>03_06_0670 +
35434203-35434355,35436601-35436729,35436978-35438409,
35438524-35439014
Length = 734
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 257 NRKGEKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRSRNA 403
++K ++ KKRK D+HK++ + +DE + + DK N+
Sbjct: 478 DKKSDRHEKKKRK--EKDKHKEKKRDKEAKKEKDEQNNNKEHDKLRENS 524
>06_03_0099 + 16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 266 GEKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRSRNA 403
G+ K+RK R+ + KET+ E + + + E R+T + R A
Sbjct: 1352 GKDAELKRRKFQRNKQVMKETFDEWEEAYQRDAEQRKTDELFMREA 1397
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 263 KGEKXXXKKRKXARDDEHKKETYHNDEYSARDETE-SRRTKDKRSR 397
KGEK ++ + R+ E ++ +E R+E E RR +++ R
Sbjct: 478 KGEKEREEEERRQREKEEEERRRQEEERKRREEEEKERREREEEER 523
>09_02_0414 - 8825575-8826654,8826737-8827144
Length = 495
Score = 27.1 bits (57), Expect = 6.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 293 KXARDDEHKKETYHNDEYSARDETESRRTKDKRS 394
+ AR+DE KKET + + AR R+ K S
Sbjct: 367 RVAREDEPKKETQPHQGFKARKVNRKRKGKASSS 400
>07_03_1685 + 28645284-28645454,28645681-28647069
Length = 519
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +3
Query: 210 QTKNSEEDSRRRDSETIEKVKKXXXRNERXPGTTNTKRKHITMMNIQLE 356
QT N + R S + ++KK E+ +N + TM+ ++E
Sbjct: 218 QTLNDRQRRREDSSHILMEIKKVTSEIEQLKSASNASKSEATMLAAEIE 266
>07_01_0463 + 3502708-3503535
Length = 275
Score = 27.1 bits (57), Expect = 6.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 254 NNRKGEKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRSRNAG 406
+ +G+K KK K + E KKE + + DE E + K+K+ ++ G
Sbjct: 130 DEEEGKKKEKKKDKDGDEKEGKKEKKKDKD---GDEEEEGKKKEKKKKDKG 177
>09_06_0048 +
20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 26.6 bits (56), Expect = 8.1
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 232 IVEDVTLKQ*KR*KRXGXETKXRPGRRTQKGNISQ**IFSSRRDRVQEN*G 384
+V+D T K KR G +TK GR+ +K +S+ + S R R E+ G
Sbjct: 617 VVKDSTRKSTKRGLTGGRDTKSSTGRKVRK--LSKRALSSDHRPRESESVG 665
>05_01_0423 + 3322335-3322385,3322618-3323532,3323636-3323878
Length = 402
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 305 DDEHKKETYHNDEYSARDETESRRTKDKRSRNAGM 409
DD+ +E ND S DE++ + KR R G+
Sbjct: 340 DDDDDEENDDNDSDSDYDESDEEEEERKRKRGKGI 374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,568,821
Number of Sequences: 37544
Number of extensions: 102971
Number of successful extensions: 365
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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