Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30413
(419 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 31 0.32
At4g16050.1 68417.m02435 expressed protein 31 0.42
At5g05210.1 68418.m00555 nucleolar matrix protein-related contai... 30 0.55
At4g38590.1 68417.m05462 glycosyl hydrolase family 35 protein si... 30 0.55
At3g29075.1 68416.m03637 glycine-rich protein 30 0.55
At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family p... 29 1.7
At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family p... 29 1.7
At2g44200.1 68415.m05500 expressed protein 29 1.7
At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr... 29 1.7
At1g56660.1 68414.m06516 expressed protein 29 1.7
At2g39320.1 68415.m04827 OTU-like cysteine protease family prote... 28 3.0
At5g60030.1 68418.m07527 expressed protein 27 3.9
At5g57120.1 68418.m07132 expressed protein weak similarity to SP... 27 3.9
At5g45520.1 68418.m05591 hypothetical protein 27 3.9
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 3.9
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 3.9
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 3.9
At4g23530.1 68417.m03391 expressed protein 27 3.9
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 27 3.9
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 27 5.2
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 27 5.2
At5g53440.1 68418.m06641 expressed protein 27 6.8
At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein... 27 6.8
At3g09650.1 68416.m01144 pentatricopeptide (PPR) repeat-containi... 27 6.8
At5g44510.1 68418.m05453 disease resistance protein (TIR-NBS-LRR... 26 9.0
At3g28770.1 68416.m03591 expressed protein 26 9.0
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 31.1 bits (67), Expect = 0.32
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 254 NNRKGEKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKDK 388
N RK +K K+R+ R + K + D+Y D+ E + K+K
Sbjct: 33 NERKKDKGSEKRREKDRRKKRVKSSDSEDDYDRDDDEEREKRKEK 77
>At4g16050.1 68417.m02435 expressed protein
Length = 666
Score = 30.7 bits (66), Expect = 0.42
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 260 RKGEKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRS 394
+K + K+RK AR+D+ +DE + ++ ES T+D S
Sbjct: 492 KKAKHSTNKRRKRAREDDESAAETEDDESADTEDDESADTEDDES 536
>At5g05210.1 68418.m00555 nucleolar matrix protein-related contains
Pfam domain, PF04935: Surfeit locus protein 6
Length = 386
Score = 30.3 bits (65), Expect = 0.55
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Frame = +2
Query: 305 DDEHKKETYHN--DEYSARDETESRRTKDKRS 394
DD+ KKET +N ++ +++ET++ R KD RS
Sbjct: 132 DDDSKKETDNNRLNDDDSKEETDNNRQKDDRS 163
>At4g38590.1 68417.m05462 glycosyl hydrolase family 35 protein
similar to beta-galactosidase GI:7939621 from
[Lycopersicon esculentum]; contains Pfam profile PF01301
: Glycosyl hydrolases family 35
Length = 988
Score = 30.3 bits (65), Expect = 0.55
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 260 RKGEKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRSRN 400
+K K KK+K +D+E + + +DE ++ E++ TKD ++N
Sbjct: 769 KKEGKQDEKKKKEDKDEEEEDDE-DDDEEEEEEDKENKDTKDMENKN 814
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +2
Query: 284 KKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRSRN 400
+K++ +D++ KKE +E D+ E +DK +++
Sbjct: 768 EKKEGKQDEKKKKEDKDEEEEDDEDDDEEEEEEDKENKD 806
>At3g29075.1 68416.m03637 glycine-rich protein
Length = 294
Score = 30.3 bits (65), Expect = 0.55
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 254 NNRKGEKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKDKR 391
+N + KK+K DDE KK+ H D D+ E ++ KD R
Sbjct: 235 HNYNDDDDEKKKKKEYHDDEDKKKKKHYD----NDDDEKKKKKDHR 276
>At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family
protein (SRL1) contains Pfam profile PF03371: PRP38
family
Length = 385
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 254 NNRKGEKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRSR 397
++R ++ ++R+ R+ E ++ Y E ++ SRR D RSR
Sbjct: 247 SDRDSDRQREREREKDRERERGRDRYRERERDYGNDRRSRRDYDSRSR 294
>At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family
protein (SRL1) contains Pfam profile PF03371: PRP38
family
Length = 393
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 254 NNRKGEKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRSR 397
++R ++ ++R+ R+ E ++ Y E ++ SRR D RSR
Sbjct: 255 SDRDSDRQREREREKDRERERGRDRYRERERDYGNDRRSRRDYDSRSR 302
>At2g44200.1 68415.m05500 expressed protein
Length = 493
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 260 RKGEKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRSRN 400
R+ +KR+ DD HK+ H+ Y R +K + SR+
Sbjct: 243 RESRDRHYEKRRSELDDGHKRRERHDTHYERRRSEMDDESKRRESRD 289
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 260 RKGEKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRS 394
R+ E KR+ +RD+ +++ D+ S R E+ + + +RS
Sbjct: 274 RRSEMDDESKRRESRDNHYERRRSDLDDESKRRESHDKHFERQRS 318
>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
protein
Length = 571
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 132 YQNLYDCSHHDSCHHPFD 79
YQ+ D HH+ HHPFD
Sbjct: 532 YQHYDDHQHHNGHHHPFD 549
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = +2
Query: 254 NNRKGEKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRSRNAG 406
+ +K +K K+ K D+E KK+ + + E ++ KD + + G
Sbjct: 434 DKKKNKKKDTKEPKMTEDEEEKKDDSKDVKIEGSKAKEEKKDKDVKKKKGG 484
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 263 KGEKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKDK 388
KG+K +K ++DE KK+ H++ E +S++ K K
Sbjct: 213 KGKKEKGEKGDLEKEDEEKKKE-HDETDQEMKEKDSKKNKKK 253
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 260 RKGEKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRS 394
+K K KK++ D+ +KET D+ + + + K+K+S
Sbjct: 326 KKKNKDKAKKKETVIDEVCEKETKDKDDDEGETKQKKNKKKEKKS 370
>At2g39320.1 68415.m04827 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 189
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 269 EKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRSRN 400
E+ +K + +D E KK+ D+ A+ + E + K+K++RN
Sbjct: 140 ERKDMEKEEKKKDKEDKKKD-KEDKKKAKVQKEKKEKKEKKNRN 182
>At5g60030.1 68418.m07527 expressed protein
Length = 292
Score = 27.5 bits (58), Expect = 3.9
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 260 RKGEKXXXKKRKXARDDEHKKETYHNDEYSARDE---TESRRTKDKR 391
R GE+ KK+K D+E E + + DE +E R++K KR
Sbjct: 239 RSGERKKEKKKKRKSDEEIVSEERKSKKKRKSDEEMGSEERKSKKKR 285
>At5g57120.1 68418.m07132 expressed protein weak similarity to
SP|Q14978 Nucleolar phosphoprotein p130 {Homo sapiens}
Length = 330
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 284 KKRKXARDDEHKKETYHNDEYSARDETE 367
KKRK + +E K+ET +DE S R + E
Sbjct: 175 KKRKRSEPEETKEETEDDDEESKRRKKE 202
>At5g45520.1 68418.m05591 hypothetical protein
Length = 1167
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 263 KGEKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTK 382
+GEK K K + + KE DE RDE E+++++
Sbjct: 707 EGEKKPDDKSKVEKKGDGDKENADLDEGKKRDEVEAKKSE 746
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 284 KKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRSRN 400
++ + RDD+ + + D RD+ RR++ RSR+
Sbjct: 113 RRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSRSRS 151
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 284 KKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRSRN 400
++ + RDD+ + + D RD+ RR++ RSR+
Sbjct: 113 RRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSRSRS 151
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 284 KKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRSRN 400
++ + RDD+ + + D RD+ RR++ RSR+
Sbjct: 113 RRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSRSRS 151
>At4g23530.1 68417.m03391 expressed protein
Length = 396
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 13 DEMEITSKTQEIEEI*KRMTGGIE 84
+E+E+ K E+EEI +RM G+E
Sbjct: 343 EEVEVAEKVDEMEEICRRMEVGLE 366
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles
PF01846: FF domain, PF00397: WW domain
Length = 946
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 269 EKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRSR 397
E+ ++ A++ E K++ + RDE E R+ KDK R
Sbjct: 784 EEYITSLQEKAKEKERKRDEEKVRKEKERDEKEKRKDKDKERR 826
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +3
Query: 210 QTKNSEEDSRRRDSETIEKVKKXXXRNERXPGTTNTKRKHITMMNIQLETRPSPGELRTR 389
QTKN E++ + S E K +NE+ ++ + K + E S GE +
Sbjct: 292 QTKNEEDEKEKVQSSEEESKVKESGKNEKDASSSQDESKEEKPERKKKEESSSQGEGKEE 351
Query: 390 E 392
E
Sbjct: 352 E 352
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +2
Query: 263 KGEKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRSRNA 403
K E K DD K E+ +E + ETE + + +++++A
Sbjct: 452 KRESGNDTSNKETEDDSSKTESEKKEENNRNGETEETQNEQEQTKSA 498
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 272 KXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKDKRSRN 400
K KK+K ++D E + DE +A + ++ KDK+ +N
Sbjct: 517 KSEKKKKKKSKDTEAAVDA--EDESAAEKSEKKKKKKDKKKKN 557
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 263 KGEKXXXKKRKXARDDEHKKETYHNDEYSARDETESR 373
K E+ +K RDD KE +DE RDE++ +
Sbjct: 245 KEEEDIKQKGDKQRDDRPTKEHLRSDEKLTRDESKKK 281
>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 595
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 284 KKRKXARDDEHKKETYHNDEYSARDETESRRTKDKR 391
KKRK ++ HKK + E + T S +++KR
Sbjct: 316 KKRKSKKNKRHKKHSSRTVEETDESSTGSEDSREKR 351
>At3g09650.1 68416.m01144 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 778
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 269 EKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTKD 385
E K+ + A DDE E + YSARDE D
Sbjct: 349 EDLKEKEEEEAEDDEDAFEDDEDSGYSARDEVSEEGVVD 387
>At5g44510.1 68418.m05453 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1187
Score = 26.2 bits (55), Expect = 9.0
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 93 HHPFDSSCHPFLYL 52
HHP+ CH LYL
Sbjct: 590 HHPYGDRCHDILYL 603
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 263 KGEKXXXKKRKXARDDEHKKETYHNDEYSARDETESRRTK 382
K EK + K + + KKE N+E S E ES +++
Sbjct: 1135 KNEKKKSQHVKLVKKESDKKEKKENEEKSETKEIESSKSQ 1174
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,370,898
Number of Sequences: 28952
Number of extensions: 85801
Number of successful extensions: 451
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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