Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30412
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    28   0.72 
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    27   2.2  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   2.9  
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    25   6.7  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   8.9  

>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 21/51 (41%), Positives = 24/51 (47%)
 Frame = -3

Query: 429 GWSGRWPDRSPRSHQGRARHTVAARIRLHSDSDPRSYRRRARNSWTGRSTS 277
           G SGR   RSP  H+ R+R              PR YR R+R S  GRS S
Sbjct: 108 GDSGRLRSRSPSPHEARSRSPYNDERSDRRSMSPR-YRSRSR-SPDGRSRS 156


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +1

Query: 310 TASVTPRVTVTVKPDSRRHCVPCPALVA 393
           T  VTP +TVT  PDS       PA VA
Sbjct: 200 TNIVTPPITVTAVPDSPNPPAATPATVA 227


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 60  SWSSAWTRWRPSRRCSSTI 116
           SW+  W RW   RR SS +
Sbjct: 64  SWNDCWMRWGQLRRVSSQL 82


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 137 RTAIIDLGLGXWIPASCPTE 196
           R  I+D GL  W  A  PTE
Sbjct: 196 RGVILDFGLAQWQEADAPTE 215


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/42 (23%), Positives = 16/42 (38%)
 Frame = +1

Query: 310 TASVTPRVTVTVKPDSRRHCVPCPALVAPWTPVRPPTRPSKG 435
           TA++  +  +   PD        P    PW P+  P +   G
Sbjct: 289 TATLEQKSAMFTMPDQNYTIEEAPPTAEPWEPISAPKKQEFG 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,774
Number of Sequences: 5004
Number of extensions: 41734
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)