Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30412
(515 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11) 36 0.026
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.24
SB_28991| Best HMM Match : EGF_2 (HMM E-Value=2.9e-06) 32 0.32
SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.43
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23) 30 0.98
SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06) 30 1.3
SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 29 2.3
SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11) 29 3.0
SB_58026| Best HMM Match : ANF_receptor (HMM E-Value=0) 29 3.0
SB_22624| Best HMM Match : EGF (HMM E-Value=0.0029) 29 3.0
SB_37808| Best HMM Match : Avirulence (HMM E-Value=2.8) 28 5.3
SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_22837| Best HMM Match : REJ (HMM E-Value=0.057) 27 6.9
SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_40186| Best HMM Match : Extensin_2 (HMM E-Value=0.0036) 27 6.9
SB_9151| Best HMM Match : WAP (HMM E-Value=0.045) 27 6.9
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_46409| Best HMM Match : EGF_2 (HMM E-Value=0.011) 27 9.2
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_26220| Best HMM Match : EGF_2 (HMM E-Value=0.011) 27 9.2
SB_10930| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 37.9 bits (84), Expect = 0.005
Identities = 14/21 (66%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +3
Query: 285 ICPSNCSGHGVCNS-EGHCHC 344
+CP+NCSGHG CNS G C C
Sbjct: 363 VCPNNCSGHGSCNSASGLCTC 383
>SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)
Length = 1417
Score = 35.5 bits (78), Expect = 0.026
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +3
Query: 258 ETIVNXHSSICPS----NCSGHGVCNSEGHCHCE 347
E++ + CPS C+GHGVC +EG C C+
Sbjct: 515 ESLSSLRPKSCPSIGGKECAGHGVCTNEGKCACD 548
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 32.3 bits (70), Expect = 0.24
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 3/23 (13%)
Frame = +3
Query: 288 CP---SNCSGHGVCNSEGHCHCE 347
CP ++CSGHG C ++G C+C+
Sbjct: 80 CPGYKTDCSGHGSCLADGKCYCD 102
Score = 30.7 bits (66), Expect = 0.74
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 288 CPSNCSGHGVCNSEGHCHCE 347
C CSGHG CN HC C+
Sbjct: 306 CDVECSGHGKCNG-SHCICD 324
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Frame = +3
Query: 279 SSICPSN----CSGHGVCNS-EGHCHCE 347
S +CP CS HG+CN G C CE
Sbjct: 4262 SMVCPGGAANPCSNHGLCNPLTGECLCE 4289
Score = 27.9 bits (59), Expect = 5.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 288 CPSNCSGHGVCNSEGHCHCE 347
C C HGVC +G C C+
Sbjct: 178 CDKECDSHGVCR-DGKCSCD 196
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +3
Query: 267 VNXHSSICPS--NCSGHGVCNSEGH 335
V H CP +C+GHGVC+ H
Sbjct: 108 VGCHIPHCPGGGDCNGHGVCDGVTH 132
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Frame = +3
Query: 288 CPSN---CSGHGVCNS-EGHCHC 344
CP N CSGHGVC S C C
Sbjct: 209 CPGNNVDCSGHGVCLSVTQECDC 231
Score = 24.2 bits (50), Expect(2) = 8.2
Identities = 9/13 (69%), Positives = 10/13 (76%), Gaps = 2/13 (15%)
Frame = +3
Query: 288 CPS--NCSGHGVC 320
CP +CSGHGVC
Sbjct: 337 CPGEPDCSGHGVC 349
Score = 21.0 bits (42), Expect(2) = 8.2
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +3
Query: 300 CSGHGVCNSEGHC 338
C G +CN+ G+C
Sbjct: 376 CPGVPMCNARGNC 388
>SB_28991| Best HMM Match : EGF_2 (HMM E-Value=2.9e-06)
Length = 263
Score = 31.9 bits (69), Expect = 0.32
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 288 CPSNCSGHGVCNS-EGHCHCE 347
CP +CS HGVC+ G C CE
Sbjct: 88 CPKDCSHHGVCDKLTGVCSCE 108
>SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 31.5 bits (68), Expect = 0.43
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 288 CPSNCSGHGVCNSEGHCHCE 347
C + CSGHG C+S G C C+
Sbjct: 143 CTNGCSGHGACDS-GVCQCQ 161
>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 31.1 bits (67), Expect = 0.56
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Frame = +3
Query: 288 CP---SNCSGHGVCNSEGH-CHCE 347
CP ++CSGHG CNS H C CE
Sbjct: 1294 CPGHRTDCSGHGECNSATHVCVCE 1317
Score = 30.7 bits (66), Expect = 0.74
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +3
Query: 288 CPSNCSGHGVCNSEGHCHC 344
C S CSGHG C EG C C
Sbjct: 1520 CQSECSGHGEC-VEGKCKC 1537
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +3
Query: 297 NCSGHGVCNSEGH-CHCE 347
+CSGHG C+S H C C+
Sbjct: 1431 DCSGHGTCDSANHKCICD 1448
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 288 CPSNCSGHGVCNSEGHCHCE 347
C CSGHG C +G C C+
Sbjct: 1649 CNEECSGHGKC-EDGKCVCD 1667
>SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)
Length = 1531
Score = 30.3 bits (65), Expect = 0.98
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 178 GLVPDGAACGEHKMCLKQRCVSVESVG 258
G+V G CG+ KMC +C ++ +G
Sbjct: 631 GMVASGTKCGDGKMCFNYQCQTLAGLG 657
>SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06)
Length = 776
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 279 SSICPSNCSGHGVCNSEGHCHCE 347
+ +CP +C+GHG C E C C+
Sbjct: 717 NKLCPDDCNGHGKCR-ERICTCD 738
>SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 282 SICPSNCSGHGVCNSEGHCHCE 347
++CP++CSG+G C + C CE
Sbjct: 722 NLCPNDCSGNGNCTNR-TCTCE 742
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 292 RPTVPGTASVTPRVTVTVKPDSRRHCVPCPALVAPWTPVRPPT-RPSK 432
RPT T T + V+P+ P P P T R PT RP+K
Sbjct: 177 RPTERPTKKPTKPLLPEVEPEEEERATPRPTKAKPTTMKRRPTERPTK 224
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 292 RPTVPGTASVTPRVTVTVKPDSRRHCVPCPALVAPWTPVRPPT-RPSK 432
RPT T T + V+P+ P P P T R PT RP+K
Sbjct: 217 RPTERPTKKPTKPLLPEVEPEEEEKATPRPTKAKPTTIKRRPTERPTK 264
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 292 RPTVPGTASVTPRVTVTVKPDSRRHCVPCPALVAPWTPVRPPT-RPSK 432
+PT T T + V+P+ P P P T R PT RP+K
Sbjct: 340 KPTERPTKKPTKPLLPEVEPEEEERATPRPTKAKPTTIKRRPTERPTK 387
>SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)
Length = 1477
Score = 28.7 bits (61), Expect = 3.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 288 CPSNCSGHGVCNSEGHCHCE 347
C +NCS HG C + C C+
Sbjct: 1348 CENNCSNHGQCVARDTCVCD 1367
Score = 28.7 bits (61), Expect = 3.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 288 CPSNCSGHGVCNSEGHCHCE 347
C +NCS HG C + C C+
Sbjct: 1380 CENNCSNHGQCVARDTCVCD 1399
>SB_58026| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 850
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 170 WIPASCPTEPPAGSTRCA*NKGACPLSPSGDDSQXSLVDLPV 295
W CP E S R A N CP++ + + S VDLPV
Sbjct: 517 WECLQCP-EGTVTSIRGATNCSTCPVTQKSNRERTSCVDLPV 557
>SB_22624| Best HMM Match : EGF (HMM E-Value=0.0029)
Length = 115
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 282 SICPSNCSGHGVCNSEGHCHCE 347
++CP+ CS HG C S C C+
Sbjct: 32 NLCPNECSNHGNC-SNSTCICD 52
>SB_37808| Best HMM Match : Avirulence (HMM E-Value=2.8)
Length = 645
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -3
Query: 288 RSTSXC*LSSPDGLNGHAPLFQAHLVLPAGGSVGHEAGIXS----PSPKS 151
R ++ L+SP +GH +HL LP+ S GH+ G S PSP S
Sbjct: 588 RQSNVAPLASPSPNSGHRQGNVSHLALPSPNS-GHQQGNVSRLALPSPNS 636
>SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 902
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 170 WIPASCPTEPPAGSTR 217
W P S PT PP GS+R
Sbjct: 394 WSPWSAPTRPPGGSSR 409
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 500 EHDEQNRRYDAEEDHVHRDHEVPLDGRVGGRTG 402
EH EQ +D DH+H + +PL +V TG
Sbjct: 3134 EH-EQEHEHDTSGDHIHFEPIIPLPDKVERVTG 3165
>SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)
Length = 643
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +3
Query: 282 SICPSNCSGHGVCN-SEGHCHCE 347
++C +NCS HG C+ S C CE
Sbjct: 499 AVCRNNCSFHGYCDRSTKLCVCE 521
>SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 373 PCPALVAPWTPV 408
PCP +V PWTPV
Sbjct: 332 PCPYVVFPWTPV 343
>SB_40186| Best HMM Match : Extensin_2 (HMM E-Value=0.0036)
Length = 362
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = +1
Query: 295 PTVPGTASVTPRVTVTVK----PDSRRHCVPCPALVAPWTPVRPPTRPSKGT 438
PT+P A+ TP + VT P P L+ +P+ PPT P T
Sbjct: 149 PTIPFLATTTPLLMVTTSPLPPPTIPFLATTTPLLMVTTSPLPPPTIPFLAT 200
>SB_9151| Best HMM Match : WAP (HMM E-Value=0.045)
Length = 1865
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 154 FGTGRXDPGLVPDGAACGEHKMCLKQRCV 240
F D DG AC ++ C+ QRCV
Sbjct: 8 FAWSHRDAPSCSDGVACTKNDRCVNQRCV 36
>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1107
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +1
Query: 295 PTVPGTASVTPRVTVTVKPDSRRHCVPCPALVAPWTPVRPPTRP 426
PT PGT + P T P P P P TP PPT P
Sbjct: 1006 PTNPGTTTNVPDPLPTDPPTEPPTDPPTPPPTEPPTP--PPTEP 1047
>SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1409
Score = 27.1 bits (57), Expect = 9.2
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +3
Query: 300 CSGHGVCNSEGHCHCE 347
C+G G+C ++ C CE
Sbjct: 540 CAGRGICTNQKKCQCE 555
>SB_46409| Best HMM Match : EGF_2 (HMM E-Value=0.011)
Length = 323
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 276 HSSICPSNCSGHGVCNSEGHCHCE 347
H C C HG+C S+ +C C+
Sbjct: 230 HKDFCDPPCV-HGMCTSDDNCMCD 252
>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 407 SGHRPDHPKELHGRDVRDLPRH 472
SGHR D P + D+R L RH
Sbjct: 262 SGHRFDSPSNVRVYDIRQLERH 283
>SB_26220| Best HMM Match : EGF_2 (HMM E-Value=0.011)
Length = 353
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 276 HSSICPSNCSGHGVCNSEGHCHCE 347
H C C HG+C S+ +C C+
Sbjct: 241 HKDFCDPPCV-HGMCTSDDNCMCD 263
>SB_10930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.1 bits (57), Expect = 9.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 291 PSNCSGHGVCNSEGHCH 341
P C+G G CN G C+
Sbjct: 12 PGECNGQGECNGPGECN 28
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,757,277
Number of Sequences: 59808
Number of extensions: 387116
Number of successful extensions: 1509
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -