Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30412
(515 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g42620.1 68418.m05188 expressed protein 39 0.002
At3g60530.1 68416.m06770 zinc finger (GATA type) family protein ... 37 0.009
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 32 0.20
At3g57630.2 68416.m06421 exostosin family protein contains Pfam ... 32 0.20
At3g57630.1 68416.m06420 exostosin family protein contains Pfam ... 32 0.20
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 30 0.80
At2g15340.1 68415.m01754 glycine-rich protein 29 2.5
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 29 2.5
At4g04840.1 68417.m00706 methionine sulfoxide reductase domain-c... 28 3.2
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 28 3.2
At5g24670.1 68418.m02916 cytidine/deoxycytidylate deaminase fami... 27 5.7
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 27 5.7
At5g04430.1 68418.m00437 KH domain-containing protein NOVA, puta... 27 7.5
At1g64180.1 68414.m07270 intracellular protein transport protein... 27 7.5
At1g23540.1 68414.m02960 protein kinase family protein contains ... 27 9.9
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 27 9.9
>At5g42620.1 68418.m05188 expressed protein
Length = 841
Score = 38.7 bits (86), Expect = 0.002
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 288 CPSNCSGHGVCNSEGHCHCE 347
CP+NC+GHG C ++G C CE
Sbjct: 634 CPNNCNGHGKCTTQGVCICE 653
>At3g60530.1 68416.m06770 zinc finger (GATA type) family protein
identical to cDNA for GATA transcription factor 4
GI:2959735
Length = 240
Score = 36.7 bits (81), Expect = 0.009
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 295 PTVPGTASVTPRVTVTVKPDSRRHCVPCPALVAPWTPV 408
P P T +V P ++ T KP SRR P P++ W P+
Sbjct: 92 PANPLTMTVRPEISFTGKPRSRRSRAPAPSVAGTWAPM 129
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 32.3 bits (70), Expect = 0.20
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 304 PGTASVTPRVTVT-VKPDSRRHCVPCPALVAPWTPVRPPTRP 426
P T+ V P T VKP + V P P TPV+PPT P
Sbjct: 159 PPTSPVKPPTTTPPVKPPTTTPPVQPPTYNPPTTPVKPPTAP 200
>At3g57630.2 68416.m06421 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 791
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +3
Query: 288 CPSNCSGHGVCNSE-GHCHC 344
C S+CSG GVCN E G C C
Sbjct: 121 CMSDCSGQGVCNHEFGLCRC 140
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 288 CPSNCSGHGVCNSEGHCHCE 347
C + CSGHG C G C C+
Sbjct: 275 CVNQCSGHGKCRG-GFCQCD 293
>At3g57630.1 68416.m06420 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 793
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +3
Query: 288 CPSNCSGHGVCNSE-GHCHC 344
C S+CSG GVCN E G C C
Sbjct: 121 CMSDCSGQGVCNHEFGLCRC 140
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 288 CPSNCSGHGVCNSEGHCHCE 347
C + CSGHG C G C C+
Sbjct: 277 CVNQCSGHGKCRG-GFCQCD 295
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 30.3 bits (65), Expect = 0.80
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 228 FQAHLVLPAGGSVGHEAGIXSPSP 157
F ++LVLPA G + + AG +PSP
Sbjct: 231 FNSYLVLPANGRMVYSAGFSAPSP 254
>At2g15340.1 68415.m01754 glycine-rich protein
Length = 119
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -2
Query: 430 WMVGSVAGPESTEPPG--PGKAHSGGANP 350
W GS ST PG PG ++SGG+NP
Sbjct: 38 WGWGSDGSSTSTSGPGSTPGDSNSGGSNP 66
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 295 PTVPGTASVTPRVTVTVKPDSRRHCVPCPALVAPWTPVRPPTRP 426
P P + V P V V P ++ P P PV+PPT+P
Sbjct: 64 PHPPAKSPVKPPVKAPVSPPAKPPVKP-PVYPPTKAPVKPPTKP 106
>At4g04840.1 68417.m00706 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062; contains Pfam profile
PF01641: SelR domain
Length = 153
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 317 DAVPGTVGRADRRVXVDYRLPTDSTDTHL 231
DA+PG + R + R + Y + D HL
Sbjct: 92 DAIPGAINRTEERAGLRYEITCTKCDGHL 120
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 95 SAVFINNNGTIIPCRTAIIDLGLGXWIPASCPTEPPAGST 214
S V + NG P R+ + DLG G P PTE G +
Sbjct: 361 SPVRVLGNGNRSPSRSPVRDLGNGSRSPREKPTEETVGKS 400
>At5g24670.1 68418.m02916 cytidine/deoxycytidylate deaminase family
protein similar to SP|Q9URQ3 tRNA-specific adenosine
deaminase 3 (EC 3.5.4.-) (tRNA-specific adenosine-34
deaminase subunit TAD3) {Saccharomyces cerevisiae};
contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 432
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 417 DPTIQRNFMVAMYVIFLGIIPSVLLVMFLVYTR 515
DP+++R ++ Y IFL + P + M LV+ R
Sbjct: 350 DPSMERPYLCTGYDIFLLLEPCTMCAMALVHQR 382
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 295 PTVPGTASVTPRVTVTVKPDSRRHCVPCPALVAPWTPVRPP 417
P P + TP V P S P P++ +P PV PP
Sbjct: 96 PVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPP 136
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 295 PTVPGTASVTPRVTVTVKPDSRRHCVPCPALVAPWTPVRPP 417
P P + TP V P S P P++ +P PV PP
Sbjct: 114 PVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPP 154
>At5g04430.1 68418.m00437 KH domain-containing protein NOVA,
putative astrocytic NOVA-like RNA-binding protein, Homo
sapiens, U70477
Length = 313
Score = 27.1 bits (57), Expect = 7.5
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = -1
Query: 467 EEDHVHRDHEVPLDGRVGGRTGVHGATRAGQGTQWRRESGFTVTVTLGVTDAVPGTV-GR 291
E+DH ++ P G + + +G Q +E T TVT+GV D G V GR
Sbjct: 193 EDDHYSQNVHSPYSYAAGYNSVNYAPNGSGGKYQNHKEEAST-TVTIGVADEHIGLVLGR 251
Query: 290 ADRRV 276
R +
Sbjct: 252 GGRNI 256
>At1g64180.1 68414.m07270 intracellular protein transport protein
USO1-related similar to Rap8 (GI:2326183) [Rhynchosciara
americana]; contains weak similarity to
Swiss-Prot:P25386 intracellular protein transport
protein USO1 [Saccharomyces cerevisiae]
Length = 593
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -3
Query: 219 HLVLPAGGSVGHEAGIXSPSPKSMMAVRHGIIVPLLLMNTAETAATESMPNSSFSLR 49
HL+ P + H A + S P + +RHG + N T+ P S+ S+R
Sbjct: 82 HLIHPPAATKMHRAPLGSAGPSNSRRLRHGHGKAAVADNNG-IELTDHQPESAGSIR 137
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 295 PTVPGTASVTPRVTVTVKPDSRRHCVPCPALVAPWTPVRPPTRPS 429
P+ P +S TP ++ P P P+++ P T PP S
Sbjct: 40 PSPPADSSSTPPLSEPSTPPPDSQLPPLPSILPPLTDSPPPPSDS 84
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 503 EEHDEQNRRYDAEEDHVHRDHE 438
EE DE+++R E++ HR+HE
Sbjct: 106 EEEDERDKRRVNEKERGHREHE 127
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,870,280
Number of Sequences: 28952
Number of extensions: 248508
Number of successful extensions: 881
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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