Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30411
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz... 30 0.19
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 28 1.0
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr... 27 2.3
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p... 27 2.3
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 3.1
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.1
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 5.4
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1... 25 7.2
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 7.2
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr... 25 9.5
>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 526
Score = 30.3 bits (65), Expect = 0.19
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 90 PVSELSRPQDVLPRHQV*QEQHSA--XVKWFSNFREFYYIQMEKY 218
P+S ++ P VLP+H ++ A +FSNFR ++ E+Y
Sbjct: 304 PISIVTHPTVVLPKHSTFSQEKPALDTNSYFSNFRTNSFVGTEEY 348
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 27.9 bits (59), Expect = 1.0
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +2
Query: 212 EVRSASDQRRSEGGQDL-HVAGDSELYRVLNLHYNRNNHIEVPSNFRYVVEQTLREFFRA 388
EV D+R ++ G++ HV L LH N + + Y++ TLREF
Sbjct: 57 EVMDIIDRRLNDKGKNWRHVFKSLSLLEYC-LHNGSENVVRWAKDNIYIIT-TLREFVYV 114
Query: 389 IQGGKDAEQSWKKSIYKVISRLDD 460
G D Q+ + ++ S L+D
Sbjct: 115 DDNGHDQGQNVRTKAKEITSLLED 138
>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
3|||Manual
Length = 220
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +3
Query: 165 VKWFSNFREFYYIQMEKYARQAISEGLKAARTCMLPVTLNF 287
+K + N R ++ +A+ ++ G+K A++ L + NF
Sbjct: 91 MKTYENNRHMQTFRLRPFAKNGVTNGVKLAQSLFLLLPFNF 131
>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 264
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 230 DQRRSEGGQDLHVAGDSELYRVLNLHYNRNNHIEVPSN 343
++ SE G DL D +L + L L YN N +PSN
Sbjct: 16 EKMESENGVDL--GNDIDLEKGLPLKYNSENESGLPSN 51
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 3.1
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -2
Query: 528 VASAPRSSNCSRKFGNLKYSGTGSSSREITL*IDFFQLCSASFPPWIA 385
+ S+ SSN S K G++ + SSSR T+ + SA+ PP +A
Sbjct: 423 ILSSLPSSNASEKDGSILATANSSSSRRQTI------MFSATLPPRVA 464
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 382 EELAQSLLNHISEVRRYLDVVI 317
+E SL+N+ EVRR+ D+V+
Sbjct: 268 DEFFDSLINNKKEVRRHFDIVM 289
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 534 LCVASAPRSSNCSRKFGNLKYSGTGSSSREIT 439
L +S+PRS +CSR F ++ S +IT
Sbjct: 157 LTPSSSPRSPSCSRVFNAVQLCSPKKSKDDIT 188
>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 82 FWVRYPSSAVLKMYFPD 132
FWV YP ++ K YF D
Sbjct: 306 FWVYYPMLSLRKKYFED 322
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 37 LNANADAPAQSELMFFWVRYPSSAVLKMYFPDI 135
LN+N+DA + F + + +YFPD+
Sbjct: 42 LNSNSDAGKLEAINFILAQMMHGENMSLYFPDV 74
>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 169
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +2
Query: 335 PSNFRYVVEQTLREFFRAIQGGKDAEQSWK---KSIYKVISRLDDPVPEYFKLPNFLEQL 505
P+ F E ++ E ++ ++A +K S+ + ++ LDD +P+ K ++ L
Sbjct: 11 PAQFFEFKELSMEEAQGHLEKFQEAIAKYKFMETSVVRRVASLDDKIPDIRKTLQSVQFL 70
Query: 506 EERGADA 526
+ER D+
Sbjct: 71 KERQGDS 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,890,296
Number of Sequences: 5004
Number of extensions: 34018
Number of successful extensions: 98
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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