Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30411
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730...    30   1.0  
01_01_0317 - 2569072-2569305,2569418-2569633,2569738-2570016,257...    28   4.1  
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813...    28   5.4  
04_01_0625 - 8222105-8222462,8222574-8222926,8223029-8223204,822...    28   5.4  
12_02_0156 - 14532000-14532098,14532669-14534330,14534445-145346...    27   7.2  
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278...    27   9.5  
01_06_0235 - 27747908-27749023                                         27   9.5  

>12_01_0797 +
           7300370-7300506,7300682-7300798,7301903-7302443,
           7302885-7304042,7304133-7304291,7304397-7304504,
           7305045-7305304,7305936-7306101,7307025-7307050,
           7307318-7307402,7307486-7307695,7308815-7308872,
           7308964-7309037,7309323-7309373,7309576-7309664,
           7310027-7310104,7310164-7310269
          Length = 1140

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 344 FRYVVEQTLREFFRAIQGGKDAEQSWKKSIYKV 442
           F Y  E+T  + F  I+  K ++QSW  SIYKV
Sbjct: 305 FEYEDEETFEQAFSTIRA-KASKQSWLDSIYKV 336


>01_01_0317 -
           2569072-2569305,2569418-2569633,2569738-2570016,
           2570491-2570997
          Length = 411

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 25/95 (26%), Positives = 36/95 (37%)
 Frame = +2

Query: 188 RVLLHPNGEVRSASDQRRSEGGQDLHVAGDSELYRVLNLHYNRNNHIEVPSNFRYVVEQT 367
           R L    G  RSA D  R EG QD+               Y + N +E     R  +E  
Sbjct: 148 RFLRDAGGAARSAEDVERDEGRQDMEAI------------YAKLNQLEKQLEQRQSLESI 195

Query: 368 LREFFRAIQGGKDAEQSWKKSIYKVISRLDDPVPE 472
           +R+    +Q G    +   + IY ++  L   V E
Sbjct: 196 IRQMNMNLQAGGSLRKEDHEHIYSIMICLRTIVDE 230


>10_08_0936 -
           21679002-21679800,21679893-21680116,21681174-21681361,
           21681505-21682597
          Length = 767

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 416 SWKKSIYKVISRLDDPVPEYFKLPNFLEQLEERGADAT 529
           +W+K +Y+ +   +    E+ K  + L+ LE RG D+T
Sbjct: 417 AWEKKLYQEVKARESVKIEHEKKLSTLQSLEYRGRDST 454


>04_01_0625 -
           8222105-8222462,8222574-8222926,8223029-8223204,
           8223318-8223555,8226983-8227423
          Length = 521

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 165 VKW-FSNFREFYY-IQMEKYARQAISEGLKAARTCMLPVT 278
           ++W FS F E YY I M+KY         +A  TC++ +T
Sbjct: 285 LRWIFSKFAESYYSIPMKKYGMVPDHSLFEALITCLIAIT 324


>12_02_0156 -
           14532000-14532098,14532669-14534330,14534445-14534660,
           14534730-14534907,14535065-14535276
          Length = 788

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +1

Query: 439 GDLAARRPRARVLQVAELSRTVGGARR 519
           G+LAA +PRA  LQV E   TV  A R
Sbjct: 606 GELAAAKPRAVALQVVERVSTVVEALR 632


>08_02_0969 -
           23126389-23126670,23126764-23126947,23127017-23127834,
           23127953-23128642
          Length = 657

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 364 DSARVLPRDPRREGRRAELEEVDLQGDLAARR 459
           D+   L RDP  +G +   E+   +GDL  RR
Sbjct: 244 DNTGALARDPHDQGSKTTREDGRRRGDLGGRR 275


>01_06_0235 - 27747908-27749023
          Length = 371

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 21/71 (29%), Positives = 29/71 (40%)
 Frame = +1

Query: 322 PHRGTFELQICG*ADSARVLPRDPRREGRRAELEEVDLQGDLAARRPRARVLQVAELSRT 501
           PH+  F L I G     R+LP     E + A L E D +  +   RPR +  +  E    
Sbjct: 133 PHQNRFRLPIFG--VERRLLPMLTVDEAKEANLVENDEEKGVPRPRPRPKKKRRTEKGSV 190

Query: 502 VGGARRRRDAQ 534
           V  A    D +
Sbjct: 191 VIAATAAADGE 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,271,572
Number of Sequences: 37544
Number of extensions: 252514
Number of successful extensions: 768
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)