Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30411
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34529| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.45 
SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_54436| Best HMM Match : PH (HMM E-Value=0.18)                       29   2.4  
SB_49130| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_32410| Best HMM Match : DEP (HMM E-Value=2e-09)                     29   2.4  
SB_50282| Best HMM Match : MSG (HMM E-Value=7)                         29   3.2  
SB_19083| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_34529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 394 RREGRRAELEEVDLQGDLAARRPRARVLQVAELSRTVGGARRRRD 528
           R  GRR    + D + +  +RRPRAR     E  R  G  R R D
Sbjct: 116 RESGRRRARHDTDSESERESRRPRARHDTDGESKRESGRRRARHD 160



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 403 GRRAELEEVDLQGDLAARRPRARVLQVAELSRTVGGARRRRD 528
           GRR    + D + +  +RRPRAR    +E  R  G  R R D
Sbjct: 85  GRRRMRHDTDSESERESRRPRARHDTDSESGRESGRRRARHD 126


>SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1356

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/93 (20%), Positives = 40/93 (43%)
 Frame = +2

Query: 182  LPRVLLHPNGEVRSASDQRRSEGGQDLHVAGDSELYRVLNLHYNRNNHIEVPSNFRYVVE 361
            LP    H + ++     Q+R    +D H A    L     +  +R+      +    + E
Sbjct: 1157 LPDSAAHKDNQLWITEHQKRL---RDAHAAAGERLREAARIRSSRHQRGRSYAEPIPLGE 1213

Query: 362  QTLREFFRAIQGGKDAEQSWKKSIYKVISRLDD 460
            +  +   R ++G    +  W+K+++KV+ R D+
Sbjct: 1214 RVFKRN-RGVRGRNKIQDKWEKTVFKVLDRKDN 1245


>SB_54436| Best HMM Match : PH (HMM E-Value=0.18)
          Length = 940

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 182 LPRVLLHPNGEVRSASDQR-RSEGGQDLHVAGDSELYRVLNLHYNRN 319
           L    L P G    AS +R +SEGG    +  +  LYR   L Y+ N
Sbjct: 103 LDEAYLQPTGRTSKASFRRGKSEGGVRAFLDNNDALYRFSALRYSSN 149


>SB_49130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/93 (20%), Positives = 40/93 (43%)
 Frame = +2

Query: 182 LPRVLLHPNGEVRSASDQRRSEGGQDLHVAGDSELYRVLNLHYNRNNHIEVPSNFRYVVE 361
           LP    H + ++     Q+R    +D H A    L     +  +R+      +    + E
Sbjct: 466 LPDSAAHKDNQLWITEHQKRL---RDAHTAAGERLREAARIRSSRHQRGRSYAEPIPLGE 522

Query: 362 QTLREFFRAIQGGKDAEQSWKKSIYKVISRLDD 460
           +  +   R ++G    +  W+K+++KV+ R D+
Sbjct: 523 RVFKRN-RGVRGRNKIQDKWEKTVFKVLDRKDN 554


>SB_32410| Best HMM Match : DEP (HMM E-Value=2e-09)
          Length = 144

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 182 LPRVLLHPNGEVRSASDQR-RSEGGQDLHVAGDSELYRVLNLHYNRN 319
           L    L P G    AS +R +SEGG    +  +  LYR   L Y+ N
Sbjct: 69  LDEAYLQPTGRTSKASFRRGKSEGGVRAFLDNNDALYRFSALRYSSN 115


>SB_50282| Best HMM Match : MSG (HMM E-Value=7)
          Length = 228

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 182 LPRVLLHPNG-EVRSASDQRRSEGGQDLHVAGDSELYRVLNLHYNRNNHIEVPS 340
           LPRVL    G EV +  ++        L VA D+E+  ++++    N H+EV S
Sbjct: 24  LPRVLYRGGGVEVANVEEREVFTDTDALIVAYDNEVSSLISILDKTNTHVEVTS 77


>SB_19083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 206 NGEVRSASDQR-RSEGGQDLHVAGDSEL 286
           +GE+R A + + R  G  +LH+AGD EL
Sbjct: 313 DGELRIADNGKLRIAGDGELHIAGDGEL 340


>SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
 Frame = +1

Query: 355 G*ADSARVLPRDPRREGRR-AELEEVDLQGDLAARRPRARVLQVAELSRTVGGARRRR 525
           G   SA   PR  RR G   A  E    +GD A R   AR   VAE+       R  R
Sbjct: 318 GHTGSAAREPRASRRSGTHGARCENPGRRGDRAHRERGARTQGVAEIGHAWSAVREPR 375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,695,574
Number of Sequences: 59808
Number of extensions: 270010
Number of successful extensions: 727
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)