Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30411
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-8|AAA28100.1|  586|Caenorhabditis elegans C.elegans homeo...   124   5e-29
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ...    38   0.003
AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical ...    29   2.1  
U80023-12|AAY86287.1|  564|Caenorhabditis elegans Hypothetical p...    29   2.8  
Z54235-1|CAA90971.1|  416|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p...    27   6.5  
Z70207-1|CAA94128.1|  291|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z99281-4|CAB16509.1|  571|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical ...    27   8.6  

>L14331-8|AAA28100.1|  586|Caenorhabditis elegans C.elegans homeobox
           protein 26 protein.
          Length = 586

 Score =  124 bits (298), Expect = 5e-29
 Identities = 70/162 (43%), Positives = 93/162 (57%), Gaps = 3/162 (1%)
 Frame = +2

Query: 32  TSSTLTPMHLRKANSCSSGSGIRAQPXXXXXXXXXXXXXXXXXXXQMVLELPRVLLHPNG 211
           +SS LTPMHLRKA      +  R                      Q+V            
Sbjct: 426 SSSMLTPMHLRKAKLMFFYT--RYPNSNLLKSYFPDIRFNKNNTAQLVKWFSNFREFYYN 483

Query: 212 EVRSASDQRRSEG---GQDLHVAGDSELYRVLNLHYNRNNHIEVPSNFRYVVEQTLREFF 382
           ++   + Q  +EG     D+ V+ DSEL++VLN HYNRNNHI+ P    +VV++TLREF 
Sbjct: 484 QMEKFARQALAEGITDRNDIFVSKDSELFKVLNTHYNRNNHIKAPDRLVFVVQETLREFH 543

Query: 383 RAIQGGKDAEQSWKKSIYKVISRLDDPVPEYFKLPNFLEQLE 508
            AI+ GKD E SWKK+IYKVI+RL+D +P++FK PNFLE+LE
Sbjct: 544 DAIKQGKDIEPSWKKTIYKVINRLEDQIPDFFKEPNFLERLE 585



 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 22/32 (68%), Positives = 29/32 (90%)
 Frame = +1

Query: 64  QSELMFFWVRYPSSAVLKMYFPDIKFNKNNTA 159
           +++LMFF+ RYP+S +LK YFPDI+FNKNNTA
Sbjct: 437 KAKLMFFYTRYPNSNLLKSYFPDIRFNKNNTA 468



 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 22/27 (81%), Positives = 26/27 (96%)
 Frame = +3

Query: 165 VKWFSNFREFYYIQMEKYARQAISEGL 245
           VKWFSNFREFYY QMEK+ARQA++EG+
Sbjct: 471 VKWFSNFREFYYNQMEKFARQALAEGI 497


>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
           protein ZC123.3 protein.
          Length = 1623

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 20/75 (26%), Positives = 38/75 (50%)
 Frame = +2

Query: 296 LNLHYNRNNHIEVPSNFRYVVEQTLREFFRAIQGGKDAEQSWKKSIYKVISRLDDPVPEY 475
           LNLHY  ++  ++PS+   V+ +       A++ G   E S K      +S  D+P+ + 
Sbjct: 731 LNLHYEESHSSKIPSD---VLRKFGERLLAALEDGLSRENSVKNGSQSPLSNDDEPMEKK 787

Query: 476 FKLPNFLEQLEERGA 520
            +L N L ++++  A
Sbjct: 788 MRLENMLPEMDKNAA 802


>AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical
           protein T04C4.1b protein.
          Length = 893

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 284 VQSHRQHAGPGRLQTFADRLPSVLLHLDVVELSEVREPFD 165
           V   RQH+ PG LQ F   L +   H ++  L++ R   D
Sbjct: 42  VGHRRQHSSPGHLQQFQQELHARHHHANITRLNKKRRNTD 81


>AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical
           protein T04C4.1a protein.
          Length = 955

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 284 VQSHRQHAGPGRLQTFADRLPSVLLHLDVVELSEVREPFD 165
           V   RQH+ PG LQ F   L +   H ++  L++ R   D
Sbjct: 103 VGHRRQHSSPGHLQQFQQELHARHHHANITRLNKKRRNTD 142


>U80023-12|AAY86287.1|  564|Caenorhabditis elegans Hypothetical
           protein F07C4.12b protein.
          Length = 564

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -1

Query: 352 ISEVRRYLDVVISVVMQVEDSVKFRVTGNMQVLAAFRPSLIACRAYFSIW 203
           +S  R Y D  +S  + ++D V   +   + +L  F     ACR  F +W
Sbjct: 131 LSASRDYCDYSVSGTLPLKDVVVVTLNYRVGILGFFTTGDSACRGNFGLW 180


>Z54235-1|CAA90971.1|  416|Caenorhabditis elegans Hypothetical
           protein C09G9.1 protein.
          Length = 416

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 221 SASDQRRSEGGQDLHVAGD-SELYRVLNLH-YNRNNH 325
           SA++   SE GQDL  AGD  E YR L+ +  N  NH
Sbjct: 245 SATEHSSSEFGQDLEDAGDRHENYRYLHSYALNNLNH 281


>U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical
           protein ZC155.3 protein.
          Length = 845

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 353 VVEQTLREFFRAIQGGKDAEQSWKKSIYKVISRLDDPVPEYFKLP 487
           +VEQT R  F+  Q   DA+Q+  + I  V+  L       FK+P
Sbjct: 780 IVEQTSRRNFKNNQRIVDAQQAIMRQIGSVLDHLKRNPTHNFKIP 824


>Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
           protein T05F1.6 protein.
          Length = 1165

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +1

Query: 367 SARVLPRDPRREGRRAELEEVDLQGDLAARRPRARVLQVAELSRTVGGARRRRDAQ 534
           SA   PR  R  GR+++  E +LQ        +      A+ +RT  G R   DA+
Sbjct: 424 SAVPTPRSTRGRGRKSQANEENLQEKETEDPTKTHDTNQAKSTRTPRGRRSNADAE 479


>Z70207-1|CAA94128.1|  291|Caenorhabditis elegans Hypothetical
           protein F15A2.1 protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 242 SEGGQDLHVAGDSELYRVLNLHYNRNNHIEVPSNFR 349
           ++G  D  +  D    R+L+LH N       P NF+
Sbjct: 43  TDGMNDFKMKSDETWSRILSLHVNPTGETAAPPNFK 78


>Z99281-4|CAB16509.1|  571|Caenorhabditis elegans Hypothetical
           protein Y57G11C.7 protein.
          Length = 571

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 230 RLPSVLLHLDVVELSEVREPFDXCAVLF 147
           R+P+V++H  V  L E REP D  +++F
Sbjct: 330 RMPTVVVHGVVDNLLEQREPIDRHSLIF 357


>AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.7 protein.
          Length = 767

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = -1

Query: 358 NHISEVRRYLDV--VISVVMQVEDSVKFRVTGNMQVLAAF 245
           N + +VR  LD   + S+++++ D++KF + G+M  +A +
Sbjct: 82  NDLDQVRNSLDFEEINSMIVKLRDTLKFGIIGDMIEMAPY 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,739,891
Number of Sequences: 27780
Number of extensions: 199786
Number of successful extensions: 566
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)