Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30411
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   3.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.0  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +2

Query: 218 RSASDQRRSEGGQDLHVAGDSELYRVLNLHYNRNNHIEVPSNFRYV 355
           RS   + R    +   ++  S      N +YN NN+ ++  N  Y+
Sbjct: 288 RSRDRRERERSKEPKIISSLSNSCNYSNNYYNNNNYKKLYYNINYI 333


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 2    TDLPYDGVQPTSSTLTPMHLRKA 70
            +D  Y G   TSS ++PM  +K+
Sbjct: 1815 SDFIYHGTSSTSSDISPMSEQKS 1837


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 2    TDLPYDGVQPTSSTLTPMHLRKA 70
            +D  Y G   TSS ++PM  +K+
Sbjct: 1811 SDFIYHGTSSTSSDISPMSEQKS 1833


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 260  LHVAGDSELYRVLNLHYNRNN 322
            +HV G+SE   VL L ++ +N
Sbjct: 1197 VHVPGESESETVLTLAWSESN 1217


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 322 VISVVMQVEDSVKFRVTGNMQVLAAFRPSLIACRAYF 212
           V   ++Q E  V   +  N   L A +  L AC +YF
Sbjct: 25  VFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYF 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,950
Number of Sequences: 438
Number of extensions: 2327
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)