Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30410
         (437 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   0.32 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.8  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   6.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   9.0  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.32
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 267 WTKDGKEIVKSYFPI-QFRVIFTEQTVKLINKRDHHALKLIDQ 392
           +T   KE++   F + +FR+    Q  K+I + DH ALK + +
Sbjct: 642 YTTTEKELLGVIFALHKFRIYI--QVTKIIIRTDHQALKFLSR 682


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 224 IRRFTASLITSPFFSFRYSEH 162
           +RR   SL  S  FS + SEH
Sbjct: 147 LRRLEMSLEKSGLFSSKTSEH 167


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
          protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = -1

Query: 74 ALEASAHTARTKANKVSLILAQW 6
          AL  S H    K +K+    A W
Sbjct: 11 ALLISTHQTEAKTDKILCFFASW 33


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +2

Query: 341 CQAHKQKGPSRPQVDRPTKTTN 406
           C   +++  ++ + D+P  TTN
Sbjct: 264 CAVKRKEKKAQKEKDKPNSTTN 285


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,244
Number of Sequences: 336
Number of extensions: 2156
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)