Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30410
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   2.9  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   3.9  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   5.1  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    24   8.9  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    24   8.9  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    24   8.9  

>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = -1

Query: 248 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 69
           M F    ++   T   + +PF   R+  HL      S +T+ +Y+ +  T     ++++ 
Sbjct: 1   MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57

Query: 68  EASAHTARTKA 36
             +A  A T A
Sbjct: 58  NGAAKEAATAA 68


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
 Frame = -1

Query: 206 SLITSPFFSFRYSEHLAIAVSYSP------MTTLIYSCSASTSSVLGASVALEASAHTAR 45
           +LI SP  S   S ++   V  S       M  L+Y+ S + +S+  A + L+  + T  
Sbjct: 284 ALIYSPDLSMDSSNYVQSVVQTSSSILNYSMKKLLYNASFAITSLFNALLILDPKSSTFI 343

Query: 44  TKANKVSLI 18
            + N VSLI
Sbjct: 344 FQENVVSLI 352


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 206 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSV 90
           SL+ S FFS  YSE   +   +  +   IYS S S  S+
Sbjct: 6   SLLWSIFFSIVYSEKTLLNFKHYELCNGIYSKSESGGSL 44


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 149 VSYSPMTTLIYSCSASTSSVLGASVAL 69
           +S++   T +  C AST  +LGA  AL
Sbjct: 312 ISHAGSLTNLSKCPASTVQILGAEKAL 338


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 249 GLAYQLWTKDGKEIVKSYF 305
           GL + +W + G EI K +F
Sbjct: 634 GLVHTIWKEKGPEICKGFF 652


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +3

Query: 291 VKSYFPIQFRVIFTEQTVKLINKRDHHALKLIDQQKPPTKLH 416
           ++ YF +Q R++   + +K+ N  +  ++KLI+       LH
Sbjct: 444 LRYYFSLQRRLVRLRKCLKVSNTTELKSMKLINNNPSRLFLH 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,833,748
Number of Sequences: 5004
Number of extensions: 35807
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)