Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30410
(437 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 1.2
01_01_0355 + 2810340-2813112,2813213-2813637 29 1.2
06_01_0772 + 5770502-5770619,5771035-5772335 28 2.9
05_03_0618 - 16262826-16263097,16263111-16263183 28 2.9
03_02_0950 + 12661008-12662312,12662403-12662576 28 2.9
11_06_0198 - 21158350-21159528 28 3.8
08_01_0692 + 6121443-6122266,6122812-6124798 28 3.8
04_03_0641 + 18261332-18262423 28 3.8
01_07_0312 + 42677752-42678561,42678701-42678910,42679597-426797... 28 3.8
01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464 28 3.8
03_05_1097 + 30393336-30393578,30393661-30393780,30393859-303940... 27 5.0
11_02_0004 + 7260084-7260967,7261284-7263264,7263359-7263420,726... 27 6.6
04_04_1113 - 30986757-30986780,30986781-30987273,30987437-309879... 27 6.6
04_03_1035 - 21887562-21890030 27 6.6
12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209... 27 8.7
08_01_0693 + 6131714-6132531,6133038-6135027 27 8.7
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -1
Query: 392 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 306
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>01_01_0355 + 2810340-2813112,2813213-2813637
Length = 1065
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -1
Query: 431 FGSHRMQFCWWFLLVDQLEGVMVPFVYELDSLLGED--HSKLDGEVRFD 291
FGS+ + + + + L G + +Y L SL+G D ++KLDG + D
Sbjct: 216 FGSNMPRLYFLDICSNNLSGALPSSLYNLSSLMGFDAGNNKLDGSIATD 264
>06_01_0772 + 5770502-5770619,5771035-5772335
Length = 472
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 248 WTCLPVMDKGWKGNRQILLP--HPV*SDLHRADCQAHKQKGPSRPQV 382
W+ LP+++ G+ G + LP + +D HR C Q R Q+
Sbjct: 399 WSALPLLEIGFAGGAALALPPRNVFYNDPHRGLCMTFAQNPALRSQI 445
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 93 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 7
S C+CG+RS+R +E + + LG V
Sbjct: 24 SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 97 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 198
+VL+ + +GEY+ AIA CS+ L++ K V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444
>11_06_0198 - 21158350-21159528
Length = 392
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 123 ECRHW*IRDRYRQML*ISEGKEGRGYQGSREXSDRKRQEEHH 248
+CR W R + + + E +E Y G RE RKR + HH
Sbjct: 275 DCRQW--RRQEEEEAAVDE-EEDHNYGGEREQHCRKRCQHHH 313
>08_01_0692 + 6121443-6122266,6122812-6124798
Length = 936
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 395 LLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 282
++V GVM P + +L +L+G+++ KL G + FL
Sbjct: 7 IVVSASMGVMKPLLAKLTTLMGDEYKKLKGVRKQVSFL 44
>04_03_0641 + 18261332-18262423
Length = 363
Score = 27.9 bits (59), Expect = 3.8
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = -1
Query: 272 CP*LVGKSMVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSS 93
CP L + LP S+R+ SL+ P F + HLA +V+ + + SC S
Sbjct: 267 CPNL-NTRRIMTLPSSLRKL--SLLGCPSIEFIDNSHLASSVTLKGLNLKLVSC-PDLIS 322
Query: 92 VLGA 81
++GA
Sbjct: 323 IVGA 326
>01_07_0312 +
42677752-42678561,42678701-42678910,42679597-42679704,
42679915-42680010,42680090-42680182,42680276-42680386,
42680482-42680514,42680592-42680642,42680960-42681037,
42681145-42681165
Length = 536
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 158 AIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANK 30
A+ + S M T+ + C+AS +S + ALE A ++ NK
Sbjct: 465 ALENNCSHMETVFHVCTASVTSEIAEDKALELIAKAVESRMNK 507
>01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464
Length = 504
Score = 27.9 bits (59), Expect = 3.8
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
Frame = +3
Query: 141 IRDRYRQML*ISEGKEGRGYQGSREXSDRKRQ-EEHHGLAYQLWTKDGKEIVKSYFPIQF 317
I+D+YR+M+ G G ++G R RQ + W + G+ V
Sbjct: 166 IKDKYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGRKTWKEAGESTVPKMVGQGV 225
Query: 318 RVIFTEQTVKLINKRDHHALKLIDQQKPPTKLHSVTSKDK 437
+ + +RD +AL + Q+ + + KDK
Sbjct: 226 YGVGPVLAALMAERRDFYALYI--QEGMDFSVSNKKKKDK 263
>03_05_1097 +
30393336-30393578,30393661-30393780,30393859-30394017,
30394184-30394225,30394336-30394508,30394600-30394705,
30394795-30394824
Length = 290
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +2
Query: 29 LCLPSSSPCVRWLLTPHLHQELMTYWRSSCI*VSSLVNTRPLS 157
LC P + +RW TP + +++ W+ C +++ T+ ++
Sbjct: 204 LCTPQPT-IIRWSTTPPVSADVLHQWKGFCALIANAYYTKGMA 245
>11_02_0004 +
7260084-7260967,7261284-7263264,7263359-7263420,
7263614-7263686
Length = 999
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 395 LLVDQLEGVMVPFVYELDSLLGEDHSKLDG 306
++V L GVM P + +L L+ +++SKL G
Sbjct: 8 MMVSALTGVMSPVLGKLAGLMEQEYSKLRG 37
>04_04_1113 -
30986757-30986780,30986781-30987273,30987437-30987959,
30988361-30988615,30988812-30988926,30989026-30989078,
30989213-30989265,30989419-30989473,30989549-30989599,
30989776-30990024,30990122-30990350,30990994-30991305
Length = 803
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = -1
Query: 215 FTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKA 36
F +S+ + F+ +LA ++ MTT I+ C S LG L+ HT+R
Sbjct: 367 FFSSIPSGVFWPVFLIANLAALIASRTMTTAIFQC-LKQSIALGCFPRLKI-IHTSRKFM 424
Query: 35 NKVSLILAQW 6
K+ + + W
Sbjct: 425 AKIYIPVVNW 434
>04_03_1035 - 21887562-21890030
Length = 822
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 121 MSVVIGEYETAIAKCSEYLKEKKGEVIKEAVXRLIENGKRNT 246
MS V+G E A+A C EY + G + A+ R +G T
Sbjct: 781 MSEVVGVLERAVAACDEYEEGGAGAGGEPALSRSCTDGSTAT 822
>12_02_0795 +
23217463-23217684,23218296-23219155,23220001-23220929,
23221184-23221968
Length = 931
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -1
Query: 392 LVDQLEGVMVPFVYELDSLLGEDHSKL---DGEVRF 294
+ L GVM + +L +LLG+++ KL GEV F
Sbjct: 91 MASALTGVMTSVINKLTALLGKEYMKLKGVQGEVEF 126
>08_01_0693 + 6131714-6132531,6133038-6135027
Length = 935
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 395 LLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 282
++V GVM P + +L L+G+++ KL G + FL
Sbjct: 5 MVVSASMGVMKPLLTKLTVLMGDEYKKLKGVRKQVSFL 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,388,516
Number of Sequences: 37544
Number of extensions: 246538
Number of successful extensions: 784
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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