BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= heS30410 (437 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 1.2 01_01_0355 + 2810340-2813112,2813213-2813637 29 1.2 06_01_0772 + 5770502-5770619,5771035-5772335 28 2.9 05_03_0618 - 16262826-16263097,16263111-16263183 28 2.9 03_02_0950 + 12661008-12662312,12662403-12662576 28 2.9 11_06_0198 - 21158350-21159528 28 3.8 08_01_0692 + 6121443-6122266,6122812-6124798 28 3.8 04_03_0641 + 18261332-18262423 28 3.8 01_07_0312 + 42677752-42678561,42678701-42678910,42679597-426797... 28 3.8 01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464 28 3.8 03_05_1097 + 30393336-30393578,30393661-30393780,30393859-303940... 27 5.0 11_02_0004 + 7260084-7260967,7261284-7263264,7263359-7263420,726... 27 6.6 04_04_1113 - 30986757-30986780,30986781-30987273,30987437-309879... 27 6.6 04_03_1035 - 21887562-21890030 27 6.6 12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209... 27 8.7 08_01_0693 + 6131714-6132531,6133038-6135027 27 8.7 >12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 Length = 461 Score = 29.5 bits (63), Expect = 1.2 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -1 Query: 392 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 306 +V GVM P + +L LLGE+++KL G Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35 >01_01_0355 + 2810340-2813112,2813213-2813637 Length = 1065 Score = 29.5 bits (63), Expect = 1.2 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Frame = -1 Query: 431 FGSHRMQFCWWFLLVDQLEGVMVPFVYELDSLLGED--HSKLDGEVRFD 291 FGS+ + + + + L G + +Y L SL+G D ++KLDG + D Sbjct: 216 FGSNMPRLYFLDICSNNLSGALPSSLYNLSSLMGFDAGNNKLDGSIATD 264 >06_01_0772 + 5770502-5770619,5771035-5772335 Length = 472 Score = 28.3 bits (60), Expect = 2.9 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = +2 Query: 248 WTCLPVMDKGWKGNRQILLP--HPV*SDLHRADCQAHKQKGPSRPQV 382 W+ LP+++ G+ G + LP + +D HR C Q R Q+ Sbjct: 399 WSALPLLEIGFAGGAALALPPRNVFYNDPHRGLCMTFAQNPALRSQI 445 >05_03_0618 - 16262826-16263097,16263111-16263183 Length = 114 Score = 28.3 bits (60), Expect = 2.9 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -3 Query: 93 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 7 S C+CG+RS+R +E + + LG V Sbjct: 24 SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52 >03_02_0950 + 12661008-12662312,12662403-12662576 Length = 492 Score = 28.3 bits (60), Expect = 2.9 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +1 Query: 97 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 198 +VL+ + +GEY+ AIA CS+ L++ K V Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444 >11_06_0198 - 21158350-21159528 Length = 392 Score = 27.9 bits (59), Expect = 3.8 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +3 Query: 123 ECRHW*IRDRYRQML*ISEGKEGRGYQGSREXSDRKRQEEHH 248 +CR W R + + + E +E Y G RE RKR + HH Sbjct: 275 DCRQW--RRQEEEEAAVDE-EEDHNYGGEREQHCRKRCQHHH 313 >08_01_0692 + 6121443-6122266,6122812-6124798 Length = 936 Score = 27.9 bits (59), Expect = 3.8 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -1 Query: 395 LLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 282 ++V GVM P + +L +L+G+++ KL G + FL Sbjct: 7 IVVSASMGVMKPLLAKLTTLMGDEYKKLKGVRKQVSFL 44 >04_03_0641 + 18261332-18262423 Length = 363 Score = 27.9 bits (59), Expect = 3.8 Identities = 20/64 (31%), Positives = 31/64 (48%) Frame = -1 Query: 272 CP*LVGKSMVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSS 93 CP L + LP S+R+ SL+ P F + HLA +V+ + + SC S Sbjct: 267 CPNL-NTRRIMTLPSSLRKL--SLLGCPSIEFIDNSHLASSVTLKGLNLKLVSC-PDLIS 322 Query: 92 VLGA 81 ++GA Sbjct: 323 IVGA 326 >01_07_0312 + 42677752-42678561,42678701-42678910,42679597-42679704, 42679915-42680010,42680090-42680182,42680276-42680386, 42680482-42680514,42680592-42680642,42680960-42681037, 42681145-42681165 Length = 536 Score = 27.9 bits (59), Expect = 3.8 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = -1 Query: 158 AIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANK 30 A+ + S M T+ + C+AS +S + ALE A ++ NK Sbjct: 465 ALENNCSHMETVFHVCTASVTSEIAEDKALELIAKAVESRMNK 507 >01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464 Length = 504 Score = 27.9 bits (59), Expect = 3.8 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 1/100 (1%) Frame = +3 Query: 141 IRDRYRQML*ISEGKEGRGYQGSREXSDRKRQ-EEHHGLAYQLWTKDGKEIVKSYFPIQF 317 I+D+YR+M+ G G ++G R RQ + W + G+ V Sbjct: 166 IKDKYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGRKTWKEAGESTVPKMVGQGV 225 Query: 318 RVIFTEQTVKLINKRDHHALKLIDQQKPPTKLHSVTSKDK 437 + + +RD +AL + Q+ + + KDK Sbjct: 226 YGVGPVLAALMAERRDFYALYI--QEGMDFSVSNKKKKDK 263 >03_05_1097 + 30393336-30393578,30393661-30393780,30393859-30394017, 30394184-30394225,30394336-30394508,30394600-30394705, 30394795-30394824 Length = 290 Score = 27.5 bits (58), Expect = 5.0 Identities = 10/43 (23%), Positives = 23/43 (53%) Frame = +2 Query: 29 LCLPSSSPCVRWLLTPHLHQELMTYWRSSCI*VSSLVNTRPLS 157 LC P + +RW TP + +++ W+ C +++ T+ ++ Sbjct: 204 LCTPQPT-IIRWSTTPPVSADVLHQWKGFCALIANAYYTKGMA 245 >11_02_0004 + 7260084-7260967,7261284-7263264,7263359-7263420, 7263614-7263686 Length = 999 Score = 27.1 bits (57), Expect = 6.6 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = -1 Query: 395 LLVDQLEGVMVPFVYELDSLLGEDHSKLDG 306 ++V L GVM P + +L L+ +++SKL G Sbjct: 8 MMVSALTGVMSPVLGKLAGLMEQEYSKLRG 37 >04_04_1113 - 30986757-30986780,30986781-30987273,30987437-30987959, 30988361-30988615,30988812-30988926,30989026-30989078, 30989213-30989265,30989419-30989473,30989549-30989599, 30989776-30990024,30990122-30990350,30990994-30991305 Length = 803 Score = 27.1 bits (57), Expect = 6.6 Identities = 19/70 (27%), Positives = 32/70 (45%) Frame = -1 Query: 215 FTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKA 36 F +S+ + F+ +LA ++ MTT I+ C S LG L+ HT+R Sbjct: 367 FFSSIPSGVFWPVFLIANLAALIASRTMTTAIFQC-LKQSIALGCFPRLKI-IHTSRKFM 424 Query: 35 NKVSLILAQW 6 K+ + + W Sbjct: 425 AKIYIPVVNW 434 >04_03_1035 - 21887562-21890030 Length = 822 Score = 27.1 bits (57), Expect = 6.6 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 121 MSVVIGEYETAIAKCSEYLKEKKGEVIKEAVXRLIENGKRNT 246 MS V+G E A+A C EY + G + A+ R +G T Sbjct: 781 MSEVVGVLERAVAACDEYEEGGAGAGGEPALSRSCTDGSTAT 822 >12_02_0795 + 23217463-23217684,23218296-23219155,23220001-23220929, 23221184-23221968 Length = 931 Score = 26.6 bits (56), Expect = 8.7 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%) Frame = -1 Query: 392 LVDQLEGVMVPFVYELDSLLGEDHSKL---DGEVRF 294 + L GVM + +L +LLG+++ KL GEV F Sbjct: 91 MASALTGVMTSVINKLTALLGKEYMKLKGVQGEVEF 126 >08_01_0693 + 6131714-6132531,6133038-6135027 Length = 935 Score = 26.6 bits (56), Expect = 8.7 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -1 Query: 395 LLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 282 ++V GVM P + +L L+G+++ KL G + FL Sbjct: 5 MVVSASMGVMKPLLTKLTVLMGDEYKKLKGVRKQVSFL 42 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,388,516 Number of Sequences: 37544 Number of extensions: 246538 Number of successful extensions: 784 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 763 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 784 length of database: 14,793,348 effective HSP length: 76 effective length of database: 11,940,004 effective search space used: 823860276 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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