Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30410
         (437 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46018| Best HMM Match : I-set (HMM E-Value=0.025)                   29   1.3  
SB_51959| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_31546| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)                     27   5.1  
SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)                      27   6.8  
SB_59365| Best HMM Match : VWA (HMM E-Value=0)                         27   6.8  
SB_18748| Best HMM Match : F5_F8_type_C (HMM E-Value=2.3e-08)          27   8.9  
SB_54656| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_49703| Best HMM Match : PAN (HMM E-Value=0.015)                     27   8.9  

>SB_46018| Best HMM Match : I-set (HMM E-Value=0.025)
          Length = 1122

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 318 RVIFTEQTVKLI-NKRDHHALKLIDQQKPPT 407
           +V+  E+ VK I NK +H A+K   Q +PPT
Sbjct: 502 KVVKAEEQVKEIDNKNEHEAIKEAKQSEPPT 532


>SB_51959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 245 PWTCLPVMDKGWKGNRQILLPHPV*SDLHRADCQAHKQKGPSR 373
           PWT  P     W  + + L+P P  +DL R     HK++  SR
Sbjct: 46  PWTRGPYK-MAWAFSDENLVPEPTQADLERVRRLRHKRRRRSR 87


>SB_31546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 321 VIFTEQTVKLINKRDHHALKLIDQQKPPTKLHSVTSK 431
           ++FT    +  N   HH L L+D +  P   H++TSK
Sbjct: 27  ILFTRSARQFSNMLTHHFLYLVDAETTP---HNLTSK 60


>SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)
          Length = 643

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 222 DRKRQEEHHGLAYQLWTKDGK 284
           D  +  + HG+A  LWT+D K
Sbjct: 355 DGSKSSDDHGIAQYLWTRDAK 375


>SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)
          Length = 260

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 245 VFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMT 129
           +F++  SI  + A+L     F F    H+  AV+YS  T
Sbjct: 133 MFIMRLSILSYAAALFHDQGFEFSLGLHILAAVAYSVRT 171


>SB_59365| Best HMM Match : VWA (HMM E-Value=0)
          Length = 664

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 270 SITGRQVHGVPLAVFDQTXHGFLDNLS 190
           S+ G  +  +P+A+ D T H  LDNL+
Sbjct: 292 SLEGNGIRVIPVALGDATDHAELDNLT 318


>SB_18748| Best HMM Match : F5_F8_type_C (HMM E-Value=2.3e-08)
          Length = 398

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 248 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLI 120
           +V +LPF+    T + IT   F F ++  +    SY  +TTL+
Sbjct: 6   LVSVLPFARSHDTLAGITRDDFEFNFANFIKHESSYLNVTTLV 48


>SB_54656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 209 ASLITSPFFSFRYSEHLAIAVSYSPMTTL-IYSCSASTSSVLGASVALEAS 60
           AS  + P+F FR+   +A+ +S +P T L I +  A   + LG  + +  +
Sbjct: 136 ASWNSVPYFRFRHDVTIALYISQAPCTKLSICATIAPAPAQLGTHILVSTN 186


>SB_49703| Best HMM Match : PAN (HMM E-Value=0.015)
          Length = 172

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 248 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLI 120
           +V +LPF+    T + IT   F F ++  +    SY  +TTL+
Sbjct: 6   LVSVLPFARSHDTLAGITRDDFEFNFANFIKHESSYLNVTTLV 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,093,506
Number of Sequences: 59808
Number of extensions: 279920
Number of successful extensions: 857
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)