Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30409
         (372 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07)                 27   6.4  
SB_24032| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  
SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)            26   8.5  
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.5  

>SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07)
          Length = 778

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 71  KEHXNKMTKTKHSTSLLTFPEESQYGCHIKVTVRIDA 181
           K H     KT+H  S+L + E   +  H++VT   D+
Sbjct: 359 KTHHLMSHKTRHLMSVLDWQEVEPHSSHLQVTTLADS 395


>SB_24032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 255 INFTKRNVEFFYNFFITLIDIFSCVETVV 341
           I F  R  +F Y+ F+ L+ +FS   T++
Sbjct: 176 IEFYTRRADFLYSGFLVLVIVFSPFVTII 204


>SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)
          Length = 1235

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 62  SNLKEHXNKM-TKTKHSTSLLTFPEESQY 145
           S  +E  +K+ TKTKHS S+   P +SQ+
Sbjct: 701 SQFQESDSKLATKTKHSMSVHGHPSDSQW 729


>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 109 NFASHVPGRKPIWLSHKSNG*NR 177
           ++ SHVPGR P+   H S G  R
Sbjct: 325 HYRSHVPGRYPLTTVHMSPGVTR 347


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,175,321
Number of Sequences: 59808
Number of extensions: 148322
Number of successful extensions: 241
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)